SMTL ID : 4qy2.2 (1 other biounit)

Structure of H10 from human-infecting H10N8 virus in complex with human receptor analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: R.162, S.200, G.233, D.234, N.235 Chain E: P.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.162, A:G.233, A:N.235 NAG.2: 4 residues within 4Å: Chain B: H.75, N.79, N.82 Chain C: E.104 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.82 Water bridges: B:N.79 NAG.3: 5 residues within 4Å: Chain A: P.214 Chain C: R.162, G.233, D.234, N.235 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.162, C:G.233, C:N.235 Water bridges: A:Q.215 NAG.4: 4 residues within 4Å: Chain D: H.75, N.79, N.82 Chain E: E.104 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.82 NAG.5: 4 residues within 4Å: Chain C: P.214 Chain E: R.162, G.233, N.235 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:G.233, E:N.235 Water bridges: C:Q.215 NAG.6: 5 residues within 4Å: Chain A: E.104 Chain F: H.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, M. et al., Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus. Nat Commun (2015)

Release Date

2015-01-28

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

hemagglutinin

hemagglutinin

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