SMTL ID : 4r03.1

Crystal structure of a DUF3836 family protein (BDI_3222) from Parabacteroides distasonis ATCC 8503 at 1.50 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: L.22, N.29, K.30, R.54 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.22, A:N.29

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 5 residues within 4Å: Chain A: N.29, K.30, W.52, R.54, D.57 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.30, A:D.57, A:D.57 Water bridges: A:D.57, A:D.57 Salt bridges: A:R.54, A:R.54

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: V.19, K.30, R.33, W.59 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.59 Water bridges: A:K.30, A:K.30, A:K.30, A:K.30, A:R.33, A:R.33 Salt bridges: A:K.30, A:R.33 PO4.4: 1 residues within 4Å: Chain A: K.14 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.14, A:K.14 Salt bridges: A:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., Structures of single-layer beta-sheet proteins evolved from beta-hairpin repeats. Protein Sci. (2019)

Release Date

2014-08-27

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein