SMTL ID : 4r16.1

Structure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x SAJ: (2S,3S,4R,5S,6R)-5-ACETAMIDO-6-[[[(2R,3S,4R,5R)-5-[2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,4-BIS(OXIDANYL)OXANE-2-CARBOXYLIC ACID(Non-covalent)

SAJ.1: 24 residues within 4Å: Chain A: I.11, R.152, V.153, M.154, P.155, K.204, E.207, N.208, R.211, I.215, H.248, T.249, G.253, V.254, G.255, C.258, L.259, D.262, Y.318, K.319, R.398 Chain B: H.242, R.244, V.245 24 PLIP interactions: 3 interactions with chain B, 21 interactions with chain A Hydrophobic interactions: B:V.245, A:I.215 Hydrogen bonds: B:R.244, B:R.244, A:R.152, A:K.204, A:N.208, A:N.208, A:T.249, A:T.249, A:T.249, A:G.255, A:Y.318, A:R.398, A:R.398 Water bridges: A:Y.10, A:Y.10, A:R.211, A:H.257, A:L.259, A:K.319 Salt bridges: A:K.204, A:R.211, A:K.319 SAJ.2: 24 residues within 4Å: Chain A: H.242, R.244, V.245 Chain B: E.151, R.152, V.153, M.154, P.155, K.204, E.207, N.208, R.211, I.215, H.248, T.249, G.253, V.254, G.255, C.258, L.259, D.262, Y.318, K.319, R.398 25 PLIP interactions: 22 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.215, A:V.245 Hydrogen bonds: B:R.152, B:K.204, B:N.208, B:N.208, B:T.249, B:T.249, B:G.255, B:Y.318, B:R.398, B:R.398, A:R.244, A:R.244 Water bridges: B:Y.10, B:R.211, B:T.249, B:H.257, B:L.259, B:Y.318, B:K.319, B:K.319 Salt bridges: B:K.204, B:R.211, B:K.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pampa, K.J. et al., Structure of UDP-D-MAnNAc dehdrogeanse from Pyrococcus horikoshii. To be Published

Release Date

2015-10-14

Peptides

418aa long hypothetical UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

418aa long hypothetical UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase