SMTL ID : 4r23.1 (1 other biounit)

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x DXU: (3R,4R,5R)-3-(2,6-dichlorophenyl)-N-{(1R)-1-[(2R,4S)-4-(dihydroxymethyl)-5,5-dimethyl-1,3-thiazolidin-2-yl]-2-oxoethyl} -5-methyl-1,2-oxazolidine-4-carboxamide(Covalent)

DXU.1: 17 residues within 4Å: Chain A: G.209, S.210, H.246, Y.248, S.265, N.267, W.319, C.322, L.324, T.404, K.418, T.419, G.420, T.421, A.422, D.423, L.458 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.319, A:L.324, A:T.404, A:L.458 Hydrogen bonds: A:S.210, A:S.265, A:S.265, A:S.265, A:N.267, A:T.404, A:T.419, A:T.421, A:T.421, A:T.421, A:T.421, A:D.423 Salt bridges: A:K.418

3 x P4G: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE(Non-covalent)

P4G.2: 3 residues within 4Å: Chain A: T.227, D.229, T.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.227 Water bridges: A:D.229 P4G.3: 5 residues within 4Å: Chain A: S.107, G.296, Q.297, D.298, F.299 No protein-ligand interaction detected (PLIP) P4G.4: 5 residues within 4Å: Chain A: Q.155, G.156, Y.157, S.158, S.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.155, A:G.156

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 1 residues within 4Å: Chain A: W.315 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: V.410, R.467, Q.471 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.471 EDO.7: 2 residues within 4Å: Chain A: G.64, R.363 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin. To be Published

Release Date

2014-09-17

Peptides

Peptidoglycan glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan glycosyltransferase

Related Entries With Identical Sequence