- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 21 residues within 4Å:- Chain A: P.22, I.23, D.24, L.30, L.52, T.53, V.54, P.109, I.113, I.127, A.128, H.130, R.131, G.140, S.141, N.142, A.143
- Chain C: Y.60, K.110
- Ligands: MG.1, EDO.6
22 PLIP interactions:19 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:V.54, A:V.54, A:A.128, A:R.131, A:S.141, A:N.142, A:N.142, A:A.143
- Water bridges: A:P.22, A:P.22, A:D.24, A:L.30, A:R.131, A:R.131, A:R.131, A:S.141, A:S.141, C:K.110, C:K.110
- Salt bridges: A:R.131, A:R.131, C:K.110
ATP.8: 20 residues within 4Å:- Chain B: P.22, I.23, D.24, L.30, L.52, T.53, V.54, P.109, I.113, I.127, A.128, H.130, R.131, G.140, S.141, N.142, A.143
- Chain D: Y.60, K.110
- Ligands: MG.7
23 PLIP interactions:19 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:D.24, B:T.53, B:V.54, B:V.54, B:A.128, B:A.128, B:R.131, B:S.141, B:N.142, B:N.142, B:A.143
- Water bridges: B:P.22, B:D.24, B:I.126, B:S.141, B:S.141, B:N.142, D:S.108, D:K.110, D:K.110
- Salt bridges: B:R.131, B:R.131, D:K.110
ATP.11: 21 residues within 4Å:- Chain A: Y.60, K.110
- Chain C: P.22, I.23, D.24, L.30, L.52, T.53, V.54, P.109, I.113, I.127, A.128, H.130, R.131, G.140, S.141, N.142, A.143
- Ligands: MG.10, EDO.15
24 PLIP interactions:21 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:D.24, C:T.53, C:V.54, C:V.54, C:A.128, C:R.131, C:S.141, C:N.142, C:N.142, C:A.143
- Water bridges: C:P.22, C:P.22, C:D.24, C:L.30, C:R.131, C:R.131, C:R.131, C:S.141, C:S.141, A:K.110, A:K.110
- Salt bridges: C:R.131, C:R.131, A:K.110
ATP.17: 20 residues within 4Å:- Chain B: Y.60, K.110
- Chain D: P.22, I.23, D.24, L.30, L.52, T.53, V.54, P.109, I.113, I.127, A.128, H.130, R.131, G.140, S.141, N.142, A.143
- Ligands: MG.16
21 PLIP interactions:17 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:V.54, D:V.54, D:A.128, D:A.128, D:R.131, D:S.141, D:N.142, D:N.142, D:A.143
- Water bridges: D:P.22, D:D.24, D:I.126, D:S.141, D:S.141, D:N.142, B:S.108, B:K.110, B:K.110
- Salt bridges: D:R.131, D:R.131, B:K.110
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: R.148
- Chain B: L.138
- Chain D: H.149
Ligand excluded by PLIPCL.4: 4 residues within 4Å:- Chain A: L.138
- Chain B: R.148
- Chain C: R.148, H.149
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: H.149
- Chain C: R.148
- Chain D: L.138
Ligand excluded by PLIPCL.13: 4 residues within 4Å:- Chain A: R.148, H.149
- Chain C: L.138
- Chain D: R.148
Ligand excluded by PLIP- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: L.114, A.117, K.118, A.150, E.151, C.152
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.151, A:C.152
EDO.6: 5 residues within 4Å:- Chain A: I.134, Y.137, G.140
- Chain C: K.110
- Ligands: ATP.2
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Water bridges: A:R.131, A:Y.137, A:S.141, C:K.110
- Hydrogen bonds: C:K.110
EDO.9: 6 residues within 4Å:- Chain A: R.148
- Chain B: A.144, A.145, R.148
- Chain C: R.148
- Ligands: EDO.18
8 PLIP interactions:4 interactions with chain C, 3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: C:R.148, B:R.148, A:R.148
- Water bridges: C:R.148, C:R.148, C:R.148, B:S.141, B:A.145
EDO.14: 6 residues within 4Å:- Chain C: L.114, A.117, K.118, A.150, E.151, C.152
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.151, C:C.152
- Water bridges: C:E.151
EDO.15: 5 residues within 4Å:- Chain A: K.110
- Chain C: I.134, Y.137, G.140
- Ligands: ATP.11
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Water bridges: C:R.131, C:Y.137, C:S.141, A:K.110
- Hydrogen bonds: A:K.110
EDO.18: 6 residues within 4Å:- Chain A: R.148
- Chain C: R.148
- Chain D: A.144, A.145, R.148
- Ligands: EDO.9
7 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: A:R.148, A:R.148, D:R.148, C:R.148
- Water bridges: B:R.148, D:S.141, D:A.145
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bangera, M. et al., Structural and functional analysis of two universal stress proteins YdaA and YnaF from Salmonella typhimurium: possible roles in microbial stress tolerance. J.Struct.Biol. (2015)
- Release Date
- 2015-02-04
- Peptides
- Universal stress protein F: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bangera, M. et al., Structural and functional analysis of two universal stress proteins YdaA and YnaF from Salmonella typhimurium: possible roles in microbial stress tolerance. J.Struct.Biol. (2015)
- Release Date
- 2015-02-04
- Peptides
- Universal stress protein F: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B