- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.2: 9 residues within 4Å:- Chain A: C.115, S.117, C.119, C.122, M.124, R.125, G.162, K.244
- Ligands: SAH.1
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Ligand interactions- Salt bridges: A:E.224
- Metal complexes: A:C.115, A:C.119, A:C.122, SAH.1
SF4.12: 9 residues within 4Å:- Chain B: C.115, S.117, C.119, C.122, M.124, R.125, G.162, K.244
- Ligands: SAH.11
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions- Salt bridges: B:E.224
- Metal complexes: B:C.115, B:C.119, B:C.122, SAH.11
- 2 x TRP: TRYPTOPHAN(Non-covalent)
TRP.3: 14 residues within 4Å:- Chain A: F.106, P.108, Y.110, L.160, F.222, T.341, T.342, R.343, S.360, G.362, P.364, F.384, V.386
- Ligands: SAH.1
14 PLIP interactions:14 interactions with chain A,- Hydrophobic interactions: A:P.108, A:P.108, A:L.160, A:P.364, A:F.384, A:V.386
- Hydrogen bonds: A:Y.110, A:Y.110, A:R.343, A:R.343, A:S.360
- Water bridges: A:N.195, A:S.301
- Salt bridges: A:R.343
TRP.13: 14 residues within 4Å:- Chain B: F.106, P.108, Y.110, L.160, F.222, T.341, T.342, R.343, S.360, G.362, P.364, F.384, V.386
- Ligands: SAH.11
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:P.108, B:P.108, B:L.160, B:P.364, B:F.384, B:V.386
- Hydrogen bonds: B:Y.110, B:R.343, B:R.343, B:S.360
- Water bridges: B:N.195, B:S.301
- Salt bridges: B:R.343
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 7 residues within 4Å:- Chain A: H.104, R.191, Y.193, T.218, Y.264, D.299, R.337
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.218, A:T.218
- Water bridges: A:D.299, A:D.299, A:R.337, A:R.337, A:R.337
GOL.5: 3 residues within 4Å:- Chain A: H.150, H.151, R.393
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.393, A:R.393
- Water bridges: A:H.151, A:P.412
GOL.6: 7 residues within 4Å:- Chain A: T.230, R.233, F.234, L.273, H.274, D.275, R.312
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.230, A:R.233, A:D.275, A:D.275, A:R.312
- Water bridges: A:R.312
GOL.14: 7 residues within 4Å:- Chain B: H.104, R.191, Y.193, T.218, Y.264, D.299, R.337
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.193, B:T.218
- Water bridges: B:D.299, B:R.337, B:R.337, B:R.337
GOL.15: 3 residues within 4Å:- Chain B: H.150, H.151, R.393
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.393, B:R.393
- Water bridges: B:H.151, B:P.412
GOL.16: 7 residues within 4Å:- Chain B: T.230, R.233, F.234, L.273, H.274, D.275, R.312
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.233, B:H.274, B:D.275, B:D.275, B:R.312
- Water bridges: B:R.312
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
K.8: 3 residues within 4Å:- Chain A: E.400, V.406, F.409
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.400, A:V.406, A:F.409, H2O.3
K.18: 3 residues within 4Å:- Chain B: E.400, V.406, F.409
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.400, B:V.406, B:F.409, H2O.20
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.9: 2 residues within 4Å:- Chain A: L.187
- Ligands: NA.7
Ligand excluded by PLIPCL.10: 2 residues within 4Å:- Chain A: D.53, E.68
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain B: L.187
- Ligands: NA.17
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: D.53, E.68
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nicolet, Y. et al., Crystal Structure of Tryptophan Lyase (NosL): Evidence for Radical Formation at the Amino Group of Tryptophan. Angew.Chem.Int.Ed.Engl. (2014)
- Release Date
- 2014-09-17
- Peptides
- NosL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x TRP: TRYPTOPHAN(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nicolet, Y. et al., Crystal Structure of Tryptophan Lyase (NosL): Evidence for Radical Formation at the Amino Group of Tryptophan. Angew.Chem.Int.Ed.Engl. (2014)
- Release Date
- 2014-09-17
- Peptides
- NosL: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B