- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.3: 28 residues within 4Å:- Chain A: G.9, A.10, T.11, G.12, A.13, V.14, A.36, S.37, R.39, S.40, T.57, S.71, A.72, G.73, S.74, T.76, N.94, T.95, R.99, P.126, N.127, C.128, G.159, G.161, M.162, G.329
- Ligands: 3GQ.4, ACT.7
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:V.14
- Hydrogen bonds: A:G.9, A:T.11, A:T.11, A:T.11, A:G.12, A:A.13, A:V.14, A:S.37, A:S.37, A:S.40, A:S.40, A:G.73, A:S.74, A:N.94, A:R.99, A:P.126, A:C.128, A:M.162
- Water bridges: A:G.15, A:T.57, A:G.163
- Salt bridges: A:R.39
NAP.9: 18 residues within 4Å:- Chain B: G.9, A.10, T.11, G.12, A.13, A.36, S.37, R.39, S.40, K.43, T.57, S.71, A.72, T.76, G.161, M.162, G.163
- Ligands: NAP.10
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:R.39
- Hydrogen bonds: B:T.11, B:T.11, B:T.11, B:T.11, B:G.12, B:A.13, B:S.37, B:S.37, B:S.40, B:S.40, B:S.40, B:K.43, B:T.76, B:K.79, B:M.162, B:G.163
- Water bridges: B:V.14, B:T.57, B:A.160, B:A.164
NAP.10: 27 residues within 4Å:- Chain B: G.9, T.11, G.12, A.13, V.14, A.36, S.37, S.40, T.57, S.71, A.72, G.73, S.74, T.76, N.94, T.95, P.126, N.127, C.128, S.158, G.159, G.161, M.162, G.329, A.330
- Ligands: NAP.9, 3GQ.11
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:V.14
- Hydrogen bonds: B:T.11, B:T.11, B:T.11, B:G.12, B:A.13, B:V.14, B:S.37, B:S.37, B:S.40, B:S.40, B:G.73, B:S.74, B:T.76, B:R.99, B:P.126, B:C.128, B:M.162
- Water bridges: B:T.57, B:G.161
- 2 x 3GQ: benzene-1,2,3-tricarboxylic acid(Non-covalent)
3GQ.4: 9 residues within 4Å:- Chain A: S.74, T.95, S.96, R.99, N.127, G.159, K.223
- Ligands: NAP.3, ACT.7
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.74, A:S.74, A:S.74, A:N.94, A:S.96, A:N.127
- Salt bridges: A:R.99, A:R.99, A:K.223, A:K.223
3GQ.11: 9 residues within 4Å:- Chain B: S.74, T.95, S.96, R.99, N.127, G.159, K.223
- Ligands: NAP.10, ACT.17
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.74, B:S.96, B:N.127
- Water bridges: B:S.75
- Salt bridges: B:R.99, B:R.99, B:K.223, B:K.223
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: E.24, S.25, R.300, W.332, E.339
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.26, A:R.300, A:E.339
- Water bridges: A:R.300
EDO.12: 5 residues within 4Å:- Chain B: E.24, S.25, R.300, W.332, E.339
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.26, B:E.339
- Water bridges: B:R.300
EDO.13: 7 residues within 4Å:- Chain B: Q.17, S.250, V.297, G.298, D.324, L.326, L.327
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.250, B:G.298
EDO.14: 7 residues within 4Å:- Chain B: E.282, Y.290, P.291, Q.292, N.295, A.296, F.303
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.290, B:Q.292, B:N.295
EDO.15: 4 residues within 4Å:- Chain A: T.225, K.229
- Chain B: L.311, D.312
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.229
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 8 residues within 4Å:- Chain A: N.127, C.128, Q.155, G.159, E.220, R.245, H.252
- Ligands: ACT.7
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.155
- Water bridges: A:R.245
- Salt bridges: A:R.245, A:H.252
ACT.7: 9 residues within 4Å:- Chain A: C.128, Q.155, G.159, I.209, R.245, H.252
- Ligands: NAP.3, 3GQ.4, ACT.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.155
- Water bridges: A:R.245
- Salt bridges: A:R.245, A:H.252
ACT.16: 9 residues within 4Å:- Chain B: N.127, C.128, Q.155, G.159, A.160, E.220, R.245, H.252
- Ligands: ACT.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.155
- Salt bridges: B:R.245, B:H.252
ACT.17: 9 residues within 4Å:- Chain B: N.127, C.128, Q.155, G.159, I.209, R.245, H.252
- Ligands: 3GQ.11, ACT.16
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.155
- Salt bridges: B:R.245, B:H.252
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x 3GQ: benzene-1,2,3-tricarboxylic acid(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B