- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 1 x PHT: PHTHALIC ACID(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.4: 28 residues within 4Å:- Chain A: G.9, A.10, T.11, G.12, A.13, V.14, A.36, S.37, R.39, S.40, T.57, S.71, A.72, G.73, S.74, T.76, N.94, T.95, R.99, P.126, N.127, C.128, G.159, G.161, M.162, G.329
- Ligands: PHT.3, ACT.11
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:V.14
- Hydrogen bonds: A:G.9, A:T.11, A:T.11, A:T.11, A:G.12, A:A.13, A:V.14, A:S.37, A:S.37, A:R.39, A:S.40, A:S.40, A:G.73, A:S.74, A:N.94, A:R.99, A:P.126, A:C.128, A:M.162
- Water bridges: A:G.15, A:T.57, A:S.74, A:G.163
- Salt bridges: A:R.39
NAP.13: 15 residues within 4Å:- Chain B: G.9, T.11, G.12, A.13, A.36, S.37, R.39, S.40, K.43, T.57, A.72, T.76, G.161, M.162, G.163
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:G.9, B:T.11, B:T.11, B:T.11, B:T.11, B:G.12, B:A.13, B:S.37, B:S.37, B:R.39, B:S.40, B:S.40, B:K.43, B:K.43, B:T.76, B:M.162, B:G.163
- Water bridges: B:V.14, B:V.14, B:T.57, B:A.164
- pi-Cation interactions: B:R.39
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: E.24, S.25, W.332, E.339
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.24, A:T.26
EDO.6: 7 residues within 4Å:- Chain A: Q.17, S.250, V.297, G.298, D.324, L.326, L.327
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.250, A:G.298
- Water bridges: A:Q.17
EDO.7: 4 residues within 4Å:- Chain A: L.311, D.312
- Chain B: T.225, K.229
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.229
EDO.8: 8 residues within 4Å:- Chain A: E.282, Y.290, P.291, Q.292, N.295, A.296, F.303
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.290, A:Q.292
EDO.9: 7 residues within 4Å:- Chain A: Q.288, I.289, Y.290, Q.292, N.295
- Chain B: Y.199
- Ligands: EDO.8
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:Y.199, A:E.282, A:Y.290, A:Q.292, A:Q.292, A:N.295
EDO.14: 4 residues within 4Å:- Chain A: A.313
- Chain B: D.147, R.148, A.238
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.147
- Water bridges: A:D.312
EDO.15: 7 residues within 4Å:- Chain B: Q.17, S.250, V.297, G.298, D.324, L.326, L.327
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.250, B:G.298
- Water bridges: B:Q.17
EDO.16: 7 residues within 4Å:- Chain B: E.282, Y.290, P.291, Q.292, N.295, A.296, F.303
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.290, B:Q.292
- Water bridges: B:N.295
EDO.17: 4 residues within 4Å:- Chain A: T.225, K.229
- Chain B: L.311, D.312
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.229
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 10 residues within 4Å:- Chain A: N.127, C.128, Q.155, G.159, I.209, E.220, R.245, H.252
- Ligands: PHT.3, ACT.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.155
- Water bridges: A:R.245
- Salt bridges: A:R.245, A:H.252
ACT.11: 10 residues within 4Å:- Chain A: C.128, Q.155, G.159, I.209, E.220, R.245, H.252
- Ligands: PHT.3, NAP.4, ACT.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.155
- Water bridges: A:R.245
- Salt bridges: A:R.245, A:H.252
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NA: SODIUM ION(Non-functional Binders)
- 1 x PHT: PHTHALIC ACID(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pavlovsky, A.G. et al., A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-10
- Peptides
- Aspartate-semialdehyde dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B