SMTL ID : 4r7s.1

Crystal structure of a tetratricopeptide repeat protein (PARMER_03812) from Parabacteroides merdae ATCC 43184 at 2.39 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 1 residues within 4Å: Chain A: K.33 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: V.15, N.46, T.49, I.50, R.53 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.46, A:R.53

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: I.151, K.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.154, A:K.154 EDO.4: 4 residues within 4Å: Chain A: S.3, E.6, L.7, K.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.3, A:K.10 EDO.5: 3 residues within 4Å: Chain A: K.17, G.18, D.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.18 Water bridges: A:D.19, A:D.19, A:D.19 EDO.6: 2 residues within 4Å: Chain A: E.201, T.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.201, A:T.205 EDO.7: 3 residues within 4Å: Chain A: T.49, N.80 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.46 EDO.8: 5 residues within 4Å: Chain A: E.110, Y.113, C.114, L.117, R.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.110, A:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a tetratricopeptide repeat protein (PARMER_03812) from Parabacteroides merdae ATCC 43184 at 2.39 A resolution. To be published

Release Date

2014-10-01

Peptides

Tetratricopeptide repeat protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tetratricopeptide repeat protein