SMTL ID : 4r86.2 (1 other biounit)

Crystal Structure of Aminoglycoside/Multidrug Efflux System AcrD from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x BR: BROMIDE ION(Non-covalent)

BR.1: 1 residues within 4Å: Chain A: F.250 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: S.52, G.53, T.54, Y.246, A.295, E.297 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.53, A:E.297

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: Y.246, K.293, I.294, A.295 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.246, A:Y.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Aminoglycoside/Multidrug Efflux System AcrD from Salmonella typhimurium. To be Published

Release Date

2014-10-08

Peptides

RND family aminoglycoside/multidrug efflux pump: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RND family aminoglycoside/multidrug efflux pump

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