- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x RB: RUBIDIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 3 residues within 4Å:- Chain A: E.29, G.30, L.31
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.31
MPD.13: 3 residues within 4Å:- Chain B: E.29, G.30, L.31
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.31
MPD.22: 3 residues within 4Å:- Chain C: E.29, G.30, L.31
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.31
MPD.31: 3 residues within 4Å:- Chain D: E.29, G.30, L.31
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:L.31
- 20 x GLY: GLYCINE(Non-covalent)(Non-functional Binders)
GLY.5: 3 residues within 4Å:- Chain A: L.64, F.67
- Chain D: F.76
No protein-ligand interaction detected (PLIP)GLY.6: 2 residues within 4Å:- Chain A: T.17, L.72
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.17
GLY.7: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.8
- Water bridges: A:Q.8
GLY.8: 3 residues within 4Å:- Chain A: S.26, G.30, L.31
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: G.8, G.8
GLY.9: 3 residues within 4Å:- Chain A: R.32, P.33, I.34
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.32, A:R.32, A:I.34
- Salt bridges: A:R.32
GLY.14: 3 residues within 4Å:- Chain B: L.64, F.67
- Chain C: F.76
No protein-ligand interaction detected (PLIP)GLY.15: 2 residues within 4Å:- Chain B: T.17, L.72
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.17
GLY.16: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.8
- Water bridges: B:Q.8
GLY.17: 3 residues within 4Å:- Chain B: S.26, G.30, L.31
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: G.17, G.17
GLY.18: 3 residues within 4Å:- Chain B: R.32, P.33, I.34
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.32, B:R.32, B:I.34
- Salt bridges: B:R.32
GLY.23: 3 residues within 4Å:- Chain A: F.76
- Chain C: L.64, F.67
No protein-ligand interaction detected (PLIP)GLY.24: 2 residues within 4Å:- Chain C: T.17, L.72
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.17
GLY.25: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.8
- Water bridges: C:Q.8
GLY.26: 3 residues within 4Å:- Chain C: S.26, G.30, L.31
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: G.26, G.26
GLY.27: 3 residues within 4Å:- Chain C: R.32, P.33, I.34
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.32, C:R.32, C:I.34
- Salt bridges: C:R.32
GLY.32: 3 residues within 4Å:- Chain B: F.76
- Chain D: L.64, F.67
No protein-ligand interaction detected (PLIP)GLY.33: 2 residues within 4Å:- Chain D: T.17, L.72
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.17
GLY.34: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.8
- Water bridges: D:Q.8
GLY.35: 3 residues within 4Å:- Chain D: S.26, G.30, L.31
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: G.35, G.35
GLY.36: 3 residues within 4Å:- Chain D: R.32, P.33, I.34
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.32, D:R.32, D:I.34
- Salt bridges: D:R.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Napolitano, L.M. et al., A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-07-01
- Peptides
- Potassium channel protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x RB: RUBIDIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 20 x GLY: GLYCINE(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Napolitano, L.M. et al., A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-07-01
- Peptides
- Potassium channel protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A - Membrane
-
We predict this structure to be a membrane protein.