- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x RB: RUBIDIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 2 residues within 4Å:- Chain A: R.32
- Ligands: GLY.8
3 PLIP interactions:2 Ligand-Ligand interactions, 1 interactions with chain A- Hydrogen bonds: G.8, G.8, A:R.32
MPD.13: 2 residues within 4Å:- Chain B: R.32
- Ligands: GLY.17
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.32
MPD.22: 2 residues within 4Å:- Chain C: R.32
- Ligands: GLY.26
3 PLIP interactions:2 Ligand-Ligand interactions, 1 interactions with chain C- Hydrogen bonds: G.26, G.26, C:R.32
MPD.31: 2 residues within 4Å:- Chain D: R.32
- Ligands: GLY.35
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Ligand interactions- Hydrogen bonds: D:R.32, G.35, G.35
- 20 x GLY: GLYCINE(Non-covalent)(Non-functional Binders)
GLY.5: 1 residues within 4Å:- Chain A: N.83
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.83
GLY.6: 2 residues within 4Å:- Chain A: L.16, S.20
No protein-ligand interaction detected (PLIP)GLY.7: 1 residues within 4Å:- Chain A: I.34
1 PLIP interactions:1 interactions with chain A- Water bridges: A:I.34
GLY.8: 2 residues within 4Å:- Ligands: MPD.4, GLY.36
No protein-ligand interaction detected (PLIP)GLY.9: 3 residues within 4Å:- Chain A: Q.54
- Chain C: R.32
- Ligands: GLY.26
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:Q.54
- Salt bridges: C:R.32
GLY.14: 1 residues within 4Å:- Chain B: N.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.83
GLY.15: 2 residues within 4Å:- Chain B: L.16, S.20
No protein-ligand interaction detected (PLIP)GLY.16: 1 residues within 4Å:- Chain B: I.34
1 PLIP interactions:1 interactions with chain B- Water bridges: B:I.34
GLY.17: 2 residues within 4Å:- Ligands: MPD.13, GLY.27
2 PLIP interactions:2 Ligand-Ligand interactions- Hydrogen bonds: G.27, G.27
GLY.18: 3 residues within 4Å:- Chain B: Q.54
- Chain D: R.32
- Ligands: GLY.35
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:Q.54
- Salt bridges: D:R.32
GLY.23: 1 residues within 4Å:- Chain C: N.83
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.83
GLY.24: 2 residues within 4Å:- Chain C: L.16, S.20
No protein-ligand interaction detected (PLIP)GLY.25: 1 residues within 4Å:- Chain C: I.34
1 PLIP interactions:1 interactions with chain C- Water bridges: C:I.34
GLY.26: 2 residues within 4Å:- Ligands: GLY.9, MPD.22
No protein-ligand interaction detected (PLIP)GLY.27: 3 residues within 4Å:- Chain B: R.32
- Chain C: Q.54
- Ligands: GLY.17
4 PLIP interactions:1 interactions with chain C, 2 Ligand-Ligand interactions, 1 interactions with chain B- Hydrogen bonds: C:Q.54, G.17, G.17
- Salt bridges: B:R.32
GLY.32: 1 residues within 4Å:- Chain D: N.83
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.83
GLY.33: 2 residues within 4Å:- Chain D: L.16, S.20
No protein-ligand interaction detected (PLIP)GLY.34: 1 residues within 4Å:- Chain D: I.34
1 PLIP interactions:1 interactions with chain D- Water bridges: D:I.34
GLY.35: 2 residues within 4Å:- Ligands: GLY.18, MPD.31
No protein-ligand interaction detected (PLIP)GLY.36: 3 residues within 4Å:- Chain A: R.32
- Chain D: Q.54
- Ligands: GLY.8
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:Q.54
- Salt bridges: A:R.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Napolitano, L.M. et al., A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-07-01
- Peptides
- Potassium channel protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x RB: RUBIDIUM ION(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 20 x GLY: GLYCINE(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Napolitano, L.M. et al., A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-07-01
- Peptides
- Potassium channel protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.