SMTL ID : 4r8l.1

Crystal structure of the Asp-bound guinea pig L-asparaginase 1 catalytic domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-tetramer

Ligands

4 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 13 residues within 4Å: Chain A: G.41, T.42, M.45, D.107, S.108, S.109, G.138, T.139, D.140, A.165, Q.166 Chain D: N.295, Y.331 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:T.42, A:T.42, A:D.107, A:S.108, A:S.109, A:T.139, A:D.140, A:D.140, A:Q.166, D:N.295 Water bridges: A:L.43 ASP.2: 12 residues within 4Å: Chain B: G.41, T.42, M.45, D.107, S.108, G.138, T.139, D.140, A.165, Q.166 Chain C: N.295, Y.331 12 PLIP interactions: 2 interactions with chain C, 10 interactions with chain B Hydrogen bonds: C:N.295, C:Y.331, B:T.42, B:T.42, B:D.107, B:D.107, B:S.108, B:T.139, B:D.140, B:Q.166 Water bridges: B:A.165 Salt bridges: B:K.211 ASP.3: 12 residues within 4Å: Chain B: N.295, Y.331 Chain C: G.41, T.42, M.45, D.107, S.108, G.138, T.139, D.140, A.165, Q.166 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.42, C:T.42, C:D.107, C:D.107, C:S.108, C:T.139, C:D.140, C:Q.166, B:N.295 Water bridges: C:L.43, C:L.43 Salt bridges: C:K.211 ASP.4: 12 residues within 4Å: Chain A: N.295, Y.331 Chain D: G.41, T.42, M.45, D.107, S.108, G.138, T.139, D.140, A.165, Q.166 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:T.42, D:T.42, D:D.107, D:D.107, D:S.108, D:T.139, D:D.140, D:Q.166, A:N.295 Water bridges: D:A.165 Salt bridges: D:K.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schalk, A.M. et al., Identification and Structural Analysis of an l-Asparaginase Enzyme from Guinea Pig with Putative Tumor Cell Killing Properties. J.Biol.Chem. (2014)

Release Date

2014-10-22

Peptides

Uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Uncharacterized protein

Related Entries With Identical Sequence