SMTL ID : 4rap.1

Crystal structure of bacterial iron-containing dodecameric glycosyltransferase TibC from enterotoxigenic E.coli H10407

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-12-mer

Ligands

12 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: C.339, C.342, C.358, C.370 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.339, A:C.342, A:C.370 FE.2: 4 residues within 4Å: Chain B: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.339, B:C.342, B:C.358, B:C.370 FE.3: 4 residues within 4Å: Chain C: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.339, C:C.342, C:C.358, C:C.370 FE.5: 4 residues within 4Å: Chain D: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.339, D:C.342, D:C.358, D:C.370 FE.6: 4 residues within 4Å: Chain E: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.339, E:C.342, E:C.358, E:C.370 FE.7: 4 residues within 4Å: Chain F: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.339, F:C.342, F:C.358, F:C.370 FE.8: 4 residues within 4Å: Chain G: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.339, G:C.342, G:C.358, G:C.370 FE.9: 4 residues within 4Å: Chain H: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.339, H:C.342, H:C.358, H:C.370 FE.10: 4 residues within 4Å: Chain I: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.339, I:C.342, I:C.358, I:C.370 FE.13: 4 residues within 4Å: Chain J: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.339, J:C.342, J:C.358, J:C.370 FE.15: 4 residues within 4Å: Chain K: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.339, K:C.342, K:C.358, K:C.370 FE.16: 4 residues within 4Å: Chain L: C.339, C.342, C.358, C.370 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.339, L:C.342, L:C.358, L:C.370

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain C: R.189, R.200, E.201 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.189, C:E.201 EDO.11: 3 residues within 4Å: Chain I: R.189, R.200, E.201 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:E.201 EDO.12: 5 residues within 4Å: Chain F: W.272 Chain I: A.259, H.260, I.270, D.276 No protein-ligand interaction detected (PLIP) EDO.14: 3 residues within 4Å: Chain J: R.189, R.200, E.201 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:E.201 EDO.17: 3 residues within 4Å: Chain L: R.189, R.200, E.201 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:R.189, L:E.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Q. et al., A structural mechanism for bacterial autotransporter glycosylation by a dodecameric heptosyltransferase family. Elife (2014)

Release Date

2014-10-29

Peptides

Glycosyltransferase TibC: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Glycosyltransferase TibC