- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x B12: COBALAMIN(Non-covalent)
B12.3: 38 residues within 4Å:- Chain A: V.276, D.289, F.290, F.291, Y.379, Q.403, S.422, Y.426, S.455, V.457, I.458, H.459, N.460, P.461, I.463, V.471, I.474, G.475, D.476, T.477, L.478, S.487, K.488, S.489, F.535, Y.538, I.540, K.542, A.543, V.545, C.548, T.549, R.552, C.561, G.562, M.565
- Ligands: SF4.2, CL.4
41 PLIP interactions:41 interactions with chain A,- Hydrophobic interactions: A:V.276, A:F.290, A:F.291, A:F.291, A:F.291, A:I.458, A:H.459, A:P.461, A:V.471, A:Y.538, A:V.545
- Hydrogen bonds: A:F.290, A:Y.379, A:Q.403, A:S.422, A:S.455, A:V.457, A:H.459, A:H.459, A:I.474, A:D.476, A:D.476, A:T.477, A:L.478, A:L.478, A:K.488, A:S.489, A:S.489, A:Y.538, A:K.542, A:K.542, A:R.552, A:C.561
- Water bridges: A:D.289, A:C.561, A:Y.653, A:Y.653, A:Q.658, A:Q.658
- Salt bridges: A:K.542
- pi-Stacking: A:Y.538
B12.8: 38 residues within 4Å:- Chain B: V.276, D.289, F.290, F.291, Y.379, Q.403, S.422, Y.426, S.455, V.457, I.458, H.459, N.460, P.461, I.463, V.471, I.474, G.475, D.476, T.477, L.478, S.487, K.488, S.489, F.535, Y.538, I.540, K.542, A.543, V.545, C.548, T.549, R.552, C.561, G.562, M.565
- Ligands: SF4.7, CL.9
35 PLIP interactions:35 interactions with chain B,- Hydrophobic interactions: B:V.276, B:F.290, B:F.291, B:F.291, B:Y.426, B:H.459, B:N.460, B:P.461, B:V.471, B:Y.538
- Hydrogen bonds: B:F.290, B:Y.379, B:Q.403, B:S.422, B:S.455, B:V.457, B:H.459, B:I.474, B:D.476, B:D.476, B:D.476, B:L.478, B:S.487, B:K.488, B:S.489, B:S.489, B:Y.538, B:K.542, B:K.542, B:C.561
- Water bridges: B:S.487, B:Y.653, B:Q.658
- Salt bridges: B:K.542
- pi-Stacking: B:Y.538
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Payne, K.A. et al., Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation. Nature (2015)
- Release Date
- 2014-10-15
- Peptides
- Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x B12: COBALAMIN(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Payne, K.A. et al., Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation. Nature (2015)
- Release Date
- 2014-10-15
- Peptides
- Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C