SMTL ID : 4raw.2 (1 other biounit)

Crystal Structure of New Delhi Metallo-beta-Lactamase-1 Mutant M67V Complexed with Hydrolyzed Ampicillin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x ZZ7: (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Non-covalent)

ZZ7.1: 15 residues within 4Å: Chain A: L.38, V.40, W.66, H.95, Q.96, D.97, H.162, C.181, K.184, L.191, G.192, N.193, H.223 Ligands: CD.2, CD.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.38, A:V.40, A:W.66, A:N.193 Hydrogen bonds: A:Q.96, A:Q.96, A:D.97, A:N.193, A:N.193 Water bridges: A:Q.96 Salt bridges: A:H.95, A:H.162, A:H.162, A:K.184, A:H.223

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 4 residues within 4Å: Chain A: H.93, H.95, H.162 Ligands: ZZ7.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.93, A:H.95, A:H.162, H2O.1 CD.3: 4 residues within 4Å: Chain A: D.97, C.181, H.223 Ligands: ZZ7.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:C.181, A:H.223, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of New Delhi Metallo-beta-Lactamase-1 Mutant M67V Complexed with Hydrolyzed Ampicillin. To be Published

Release Date

2014-11-26

Peptides

Beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase NDM-1

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