SMTL ID : 4rc7.1 (1 other biounit)

Crystal structure of cyanobacterial aldehyde-deformylating oxygenase F86YF87Y mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x PL3: HEXADECAN-1-OL(Non-covalent)

PL3.1: 20 residues within 4Å: Chain A: Y.11, I.14, I.17, V.18, G.21, E.22, A.25, E.50, Y.77, Q.100, I.104, E.105, F.107, A.108, A.111, Y.112, Y.115, E.134 Ligands: FE2.2, FE2.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.17, A:V.18, A:F.107, A:A.108, A:A.111, A:Y.112, A:Y.115, A:Y.115 Hydrogen bonds: A:Q.100

2 x FE2: FE (II) ION(Non-covalent)

FE2.2: 6 residues within 4Å: Chain A: E.22, E.50, H.53, E.134 Ligands: PL3.1, FE2.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.22, A:E.50, A:H.53, A:E.134 FE2.3: 6 residues within 4Å: Chain A: E.50, E.105, E.134, H.137 Ligands: PL3.1, FE2.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.50, A:E.105, A:E.105, A:H.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, C. et al., Structural insights into the catalytic mechanism of aldehyde-deformylating oxygenases. Protein Cell (2015)

Release Date

2014-12-17

Peptides

Aldehyde decarbonylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldehyde decarbonylase