SMTL ID : 4rdk.1

Crystal structure of Norovirus Boxer P domain in complex with Lewis b tetrasaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

2 x NDG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-GAL-FUC-FUC.1: 10 residues within 4Å: Chain A: D.114, H.116, W.174, S.176, N.177, T.179, V.224 Chain B: T.129, G.130, D.131 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.130, A:N.177, A:N.177, A:S.176, A:S.176 Hydrophobic interactions: A:W.174 Water bridges: A:N.177, A:N.177, A:N.177, A:N.177, A:G.180 NDG-GAL-FUC-FUC.2: 10 residues within 4Å: Chain A: T.129, G.130, D.131 Chain B: D.114, H.116, W.174, S.176, N.177, T.179, V.224 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.174 Hydrogen bonds: B:N.177, B:N.177, A:T.129, A:T.129, A:G.130, B:D.114, B:S.176, B:S.176 Water bridges: B:N.177, B:N.177, B:N.177, B:N.177, B:G.180, A:T.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, N. et al., Crystal structures of GI.8 Boxer virus P dimers in complex with HBGAs, a novel evolutionary path selected by the Lewis epitope. Protein Cell (2015)

Release Date

2015-01-14

Peptides

Capsid: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid

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