SMTL ID : 4ren.1

Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with petunidin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x P5M: 2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium(Non-covalent)

P5M.1: 18 residues within 4Å: Chain A: F.14, S.16, H.17, P.78, I.79, L.82, F.116, N.137, Y.145, P.179, D.181, F.192, L.196, V.274, F.365, G.366, D.367 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.116, A:F.365 Hydrogen bonds: A:P.78, A:N.137, A:N.137 Water bridges: A:Y.145, A:Y.145

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.145, F.146, N.147, I.148, D.149, G.200, V.201 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.145, A:I.148, A:D.149, A:D.149 Water bridges: A:G.200, A:G.200 GOL.3: 6 residues within 4Å: Chain A: G.345, A.346, F.365, D.367, Q.368 Ligands: P5M.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.346, A:D.367, A:Q.368 GOL.4: 4 residues within 4Å: Chain A: L.150, D.153, K.154, D.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.153, A:D.153, A:K.154, A:K.154 GOL.5: 5 residues within 4Å: Chain A: P.204, S.228, K.229, L.230, Q.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.204, A:S.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiromoto, T. et al., Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea. Protein Sci. (2015)

Release Date

2015-01-21

Peptides

UDP-glucose:anthocyanidin 3-O-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose:anthocyanidin 3-O-glucosyltransferase

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