SMTL ID : 4rev.2 (1 other biounit)

Structure of the dirigent protein DRR206

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: S.124, V.125, R.136, G.137 Chain B: T.126, G.127, M.134, H.135, R.136 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:H.135, A:R.136, A:G.137, A:G.137 Water bridges: B:G.128 GOL.5: 9 residues within 4Å: Chain B: S.124, V.125, R.136, G.137 Chain C: T.126, G.127, M.134, H.135, R.136 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:H.135, B:R.136, B:G.137, B:G.137 Water bridges: C:G.128 GOL.9: 9 residues within 4Å: Chain A: T.126, G.127, M.134, H.135, R.136 Chain C: S.124, V.125, R.136, G.137 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:H.135, C:R.136, C:G.137, C:G.137 Water bridges: A:G.128

3 x DMI: 2,3-DIMETHYLIMIDAZOLIUM ION(Non-covalent)

DMI.2: 3 residues within 4Å: Chain A: C.163, W.164 Chain C: Y.8 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:W.164, C:Y.8 pi-Stacking: A:W.164 DMI.6: 3 residues within 4Å: Chain A: Y.8 Chain B: C.163, W.164 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.164, A:Y.8 pi-Stacking: B:W.164 DMI.10: 3 residues within 4Å: Chain B: Y.8 Chain C: C.163, W.164 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:Y.8, C:W.164 pi-Stacking: C:W.164

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 8 residues within 4Å: Chain A: A.111, T.126 Chain B: A.111, T.126 Chain C: A.111, T.126 Ligands: CL.7, CL.11 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: S.94 Chain B: S.94 Chain C: S.94 Ligands: CL.8, CL.12 Ligand excluded by PLIP CL.7: 8 residues within 4Å: Chain A: A.111, T.126 Chain B: A.111, T.126 Chain C: A.111, T.126 Ligands: CL.3, CL.11 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: S.94 Chain B: S.94 Chain C: S.94 Ligands: CL.4, CL.12 Ligand excluded by PLIP CL.11: 8 residues within 4Å: Chain A: A.111, T.126 Chain B: A.111, T.126 Chain C: A.111, T.126 Ligands: CL.3, CL.7 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain A: S.94 Chain B: S.94 Chain C: S.94 Ligands: CL.4, CL.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.W. et al., Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 angstrom Resolution with Three Isolated Active Sites. J.Biol.Chem. (2015)

Release Date

2014-11-26

Peptides

Disease resistance response protein 206: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Disease resistance response protein 206

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