SMTL ID : 4rga.1 (1 other biounit)

Phage 1358 receptor binding protein in complex with the trisaccharide GlcNAc-Galf-GlcOMe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

3 x GYP- GZL- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-galactofuranose-(1-6)-methyl alpha-D-glucopyranoside(Non-covalent)

GYP-GZL-NAG.1: 14 residues within 4Å: Chain A: V.200, Q.201, S.202, R.237, K.239, F.240, D.243, N.244, N.289, S.291, A.292, N.341, F.343, Q.345 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.237, A:R.237, A:N.244, A:S.291, A:N.341, A:K.239, A:S.202, A:K.239, A:Q.345 Water bridges: A:N.289, A:N.289, A:A.292, A:V.200, A:S.202, A:S.202, A:S.202, A:S.202, A:D.243, A:N.244 Salt bridges: A:R.237 GYP-GZL-NAG.2: 14 residues within 4Å: Chain B: V.200, Q.201, S.202, R.237, K.239, F.240, D.243, N.244, N.289, S.291, A.292, N.341, F.343, Q.345 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:R.237, B:R.237, B:N.244, B:S.291, B:N.341, B:K.239, B:S.202, B:K.239, B:D.243, B:Q.345 Water bridges: B:N.289, B:N.289, B:A.292, B:V.200, B:S.202, B:S.202, B:S.202, B:S.202, B:D.243, B:N.244 Salt bridges: B:R.237 GYP-GZL-NAG.3: 14 residues within 4Å: Chain C: V.200, Q.201, S.202, R.237, K.239, F.240, D.243, N.244, N.289, S.291, A.292, N.341, F.343, Q.345 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:R.237, C:R.237, C:N.244, C:S.291, C:N.341, C:K.239, C:S.202, C:K.239, C:Q.345 Water bridges: C:N.289, C:N.289, C:A.292, C:V.200, C:S.202, C:S.202, C:S.202, C:S.202, C:D.243, C:N.244 Salt bridges: C:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCabe, O. et al., The targeted recognition of Lactococcus lactis phages to their polysaccharide receptors. Mol.Microbiol. (2015)

Release Date

2015-05-20

Peptides

Phage 1358 receptor binding protein (ORF20): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Phage 1358 receptor binding protein (ORF20)

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