SMTL ID : 4rjx.1

Crystal structure of the OprO mutant protein F62Y/D114Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-trimer

Ligands

12 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 3 residues within 4Å: Chain A: Y.321, L.323 Ligands: C8E.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.321, A:L.323 C8E.2: 5 residues within 4Å: Chain A: F.289, L.319, Y.321, Y.354 Ligands: C8E.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.289, A:F.289, A:F.289, A:Y.321 Hydrogen bonds: A:L.319 C8E.3: 5 residues within 4Å: Chain A: G.282, A.283, A.291, Q.292, A.293 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.291, A:A.293 C8E.4: 3 residues within 4Å: Chain A: W.88, Y.115, F.125 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.88, A:W.88, A:Y.115, A:F.125 C8E.6: 3 residues within 4Å: Chain B: Y.321, L.323 Ligands: C8E.7 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.321, B:L.323 C8E.7: 5 residues within 4Å: Chain B: F.289, L.319, Y.321, Y.354 Ligands: C8E.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.289, B:F.289, B:F.289, B:Y.321 Hydrogen bonds: B:L.319 C8E.8: 5 residues within 4Å: Chain B: G.282, A.283, A.291, Q.292, A.293 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.291, B:A.293 C8E.9: 3 residues within 4Å: Chain B: W.88, Y.115, F.125 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.88, B:W.88, B:Y.115, B:F.125 C8E.11: 3 residues within 4Å: Chain C: Y.321, L.323 Ligands: C8E.12 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.321, C:L.323 C8E.12: 5 residues within 4Å: Chain C: F.289, L.319, Y.321, Y.354 Ligands: C8E.11 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.289, C:F.289, C:F.289, C:Y.321 Hydrogen bonds: C:L.319 C8E.13: 5 residues within 4Å: Chain C: G.282, A.283, A.291, Q.292, A.293 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:A.291, C:A.293 C8E.14: 3 residues within 4Å: Chain C: W.88, Y.115, F.125 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:W.88, C:W.88, C:Y.115, C:F.125

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 8 residues within 4Å: Chain A: R.49, R.75, Y.77, D.109, Y.129, S.139, S.140, R.148 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.77, A:Y.77, A:D.109, A:S.140 Water bridges: A:R.49, A:N.93, A:Y.129, A:R.148 Salt bridges: A:R.49, A:R.148 PO4.10: 8 residues within 4Å: Chain B: R.49, R.75, Y.77, D.109, Y.129, S.139, S.140, R.148 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Y.77, B:Y.77, B:D.109, B:S.140 Water bridges: B:R.49, B:N.93, B:Y.129, B:R.148 Salt bridges: B:R.49, B:R.148 PO4.15: 8 residues within 4Å: Chain C: R.49, R.75, Y.77, D.109, Y.129, S.139, S.140, R.148 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Y.77, C:Y.77, C:D.109, C:S.140 Water bridges: C:R.49, C:N.93, C:Y.129, C:R.148 Salt bridges: C:R.49, C:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modi, N. et al., Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa. Biophys.J. (2015)

Release Date

2015-10-21

Peptides

Porin O: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Porin O