SMTL ID : 4rkz.1 (1 other biounit)

Crystal Structure of Mevalonate-3-Kinase from Thermoplasma acidophilum (Mevalonate 3-Phosphate/ADP Bound)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: S.67, F.81, Y.115, S.117, N.119, L.123, S.124, G.125, S.126, S.127, G.130, R.204, S.207 Ligands: 3S4.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.67, A:S.117, A:N.119, A:N.119, A:L.123, A:S.124, A:G.125, A:S.126, A:S.127, A:S.127, A:S.207, A:S.207 Salt bridges: A:R.204, A:R.204 pi-Stacking: A:F.81

1 x 3S4: (3R)-5-hydroxy-3-methyl-3-(phosphonooxy)pentanoic acid(Non-covalent)

3S4.2: 14 residues within 4Å: Chain A: G.34, L.37, L.38, S.124, E.159, R.163, R.204, S.207, H.211, Y.257, T.294, G.295, G.296 Ligands: ADP.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.34, A:L.38, A:S.124, A:G.125, A:E.159, A:H.211, A:T.294, A:G.295, A:G.296 Salt bridges: A:R.163, A:R.204

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: Y.202, Q.203, R.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.203 Salt bridges: A:R.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinokur, J.M. et al., Structural analysis of mevalonate-3-kinase provides insight into the mechanisms of isoprenoid pathway decarboxylases. Protein Sci. (2015)

Release Date

2014-12-10

Peptides

Putative uncharacterized protein Ta1305: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein Ta1305

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