SMTL ID : 4rl0.2 (2 other biounits)

Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.92, H.94, H.161 Ligands: ZN.2, 3S0.3 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.92, A:H.94, A:H.161, H2O.1, 3S0.3 ZN.2: 5 residues within 4Å: Chain A: D.96, C.180, H.222 Ligands: ZN.1, 3S0.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.96, A:C.180, A:H.222, H2O.1

1 x 3S0: (2R,5S)-5-[(carbamoyloxy)methyl]-2-[(R)-carboxy{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Non-covalent)

3S0.3: 19 residues within 4Å: Chain A: I.7, L.37, M.39, V.45, W.65, A.93, H.94, Q.95, D.96, E.124, M.126, H.161, C.180, K.183, G.191, N.192, H.222 Ligands: ZN.1, ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.192 Hydrogen bonds: A:Q.95, A:D.96, A:N.192, A:N.192 Salt bridges: A:H.94, A:H.161, A:H.161, A:K.183, A:H.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, H. et al., Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins. J.Am.Chem.Soc. (2014)

Release Date

2014-11-19

Peptides

Beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase NDM-1

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