SMTL ID : 4rlq.1 (1 other biounit)

Crystal structure of a benzoate coenzyme A ligase with o-Toluic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x 3SK: 2-methylbenzoic acid(Non-covalent)

3SK.1: 12 residues within 4Å: Chain A: A.222, Y.223, A.297, G.298, G.320, I.321, G.322, S.323, T.324, L.327, H.328, I.329 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.222, A:Y.223, A:I.329 Hydrogen bonds: A:G.298, A:G.322 Water bridges: A:E.299, A:K.422 pi-Stacking: A:H.328

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.292, L.293, A.294, L.315, D.316, V.318, P.335 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.294, A:A.294, A:D.316 Water bridges: A:R.292, A:G.314 GOL.3: 7 residues within 4Å: Chain A: D.168, T.189, A.191, N.192, P.375, S.377, T.379 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.189, A:N.192, A:P.375 Water bridges: A:S.377, A:S.377, A:S.377

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thornburg, C.K. et al., Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry (2015)

Release Date

2015-09-30

Peptides

Benzoate-coenzyme A ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Benzoate-coenzyme A ligase

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