SMTL ID : 4rm5.5 (5 other biounits)

Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.92, H.94, H.161, C.180 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.94, A:H.161, H2O.1 ZN.2: 4 residues within 4Å: Chain A: N.96, H.161, C.180, H.222 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.180, A:H.222, H2O.1, H2O.1 ZN.3: 3 residues within 4Å: Chain B: H.92, H.94, H.161 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.92, B:H.94, H2O.7 ZN.4: 4 residues within 4Å: Chain B: N.96, H.161, C.180, H.222 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.180, B:H.222, H2O.7, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, H. et al., Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins. J.Am.Chem.Soc. (2014)

Release Date

2014-11-19

Peptides

Beta-lactamase NDM-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase NDM-1

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