SMTL ID : 4rtu.1

Crystal structure of the intertwined form of the Src tyrosine kinase SH3 domain T96G/Q128R mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 9 residues within 4Å: Chain A: T.18, D.19, W.38, Y.51 Chain B: T.18, D.19, W.38, Y.51 Ligands: PGE.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.18 PGE.2: 4 residues within 4Å: Chain A: A.8, K.24, G.25 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.24 PGE.7: 9 residues within 4Å: Chain A: T.18, D.19, W.38, Y.51 Chain B: T.18, D.19, W.38, Y.51 Ligands: PGE.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.18 PGE.8: 4 residues within 4Å: Chain B: A.8, K.24, G.25 Ligands: PEG.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.24

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain A: K.24 Ligands: PGE.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.24 PEG.4: 3 residues within 4Å: Chain A: L.44, T.45 Chain B: R.27 No protein-ligand interaction detected (PLIP) PEG.9: 2 residues within 4Å: Chain B: K.24 Ligands: PGE.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.24 PEG.10: 3 residues within 4Å: Chain A: R.27 Chain B: L.44, T.45 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: T.46, R.48 Chain B: K.23 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:K.23, A:R.48 Water bridges: A:R.48, A:R.48 SO4.6: 4 residues within 4Å: Chain A: R.48 Chain B: S.14, L.20, S.21 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.14, B:D.19, B:S.21, B:S.21 Salt bridges: A:R.48 SO4.11: 3 residues within 4Å: Chain A: K.23 Chain B: T.46, R.48 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:K.23, B:R.48 Water bridges: B:R.48, B:R.48 SO4.12: 4 residues within 4Å: Chain A: S.14, L.20, S.21 Chain B: R.48 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.14, A:D.19, A:S.21, A:S.21 Salt bridges: B:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A., Crystal structure of the intertwined form of the Src tyrosine kinase SH3 domain T96G/Q128R mutant. To be Published

Release Date

2015-10-28

Peptides

Proto-oncogene tyrosine-protein kinase Src: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Proto-oncogene tyrosine-protein kinase Src

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