- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x 3ZK: 4-methoxy-3-(3-methoxypropoxy)-N-{[(3S,4S)-4-{[(4-methylphenyl)sulfonyl]amino}pyrrolidin-3-yl]methyl}-N-(propan-2-yl)benzamide(Non-covalent)
3ZK.2: 23 residues within 4Å:- Chain A: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:V.36, A:V.36, A:Y.83, A:P.118, A:P.118, A:F.124, A:L.224, A:T.309
- Hydrogen bonds: A:Y.20, A:S.84, A:S.84, A:T.85, A:D.226, A:D.226
- Water bridges: A:S.230
- pi-Stacking: A:F.124
3ZK.5: 24 residues within 4Å:- Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
- Ligands: DMS.6
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:V.36, B:V.36, B:Y.83, B:P.118, B:P.118, B:F.124, B:V.127, B:L.224, B:T.309
- Hydrogen bonds: B:Y.20, B:S.84, B:S.84, B:D.226, B:D.226
- pi-Stacking: B:F.124
3ZK.8: 23 residues within 4Å:- Chain C: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:V.36, C:V.36, C:Y.83, C:P.118, C:P.118, C:F.124, C:L.224, C:T.309
- Hydrogen bonds: C:Y.20, C:S.84, C:S.84, C:T.85, C:D.226, C:D.226
- Water bridges: C:S.230
- pi-Stacking: C:F.124
3ZK.11: 24 residues within 4Å:- Chain D: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
- Ligands: DMS.12
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:V.36, D:V.36, D:Y.83, D:P.118, D:P.118, D:F.124, D:V.127, D:L.224, D:T.309
- Hydrogen bonds: D:Y.20, D:S.84, D:S.84, D:T.85, D:D.226, D:D.226
- pi-Stacking: D:F.124
3ZK.14: 23 residues within 4Å:- Chain E: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
16 PLIP interactions:16 interactions with chain E- Hydrophobic interactions: E:V.36, E:V.36, E:Y.83, E:P.118, E:P.118, E:F.124, E:L.224, E:T.309
- Hydrogen bonds: E:Y.20, E:S.84, E:S.84, E:T.85, E:D.226, E:D.226
- Water bridges: E:S.230
- pi-Stacking: E:F.124
3ZK.17: 24 residues within 4Å:- Chain F: T.18, Q.19, Y.20, V.36, D.38, G.40, Y.83, S.84, T.85, P.118, L.121, A.122, F.124, V.127, Q.135, L.224, D.226, T.227, G.228, A.229, S.230, I.305, T.309
- Ligands: DMS.18
15 PLIP interactions:15 interactions with chain F- Hydrophobic interactions: F:V.36, F:V.36, F:Y.83, F:P.118, F:P.118, F:F.124, F:V.127, F:L.224, F:T.309
- Hydrogen bonds: F:Y.20, F:S.84, F:S.84, F:D.226, F:D.226
- pi-Stacking: F:F.124
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain A: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, R.321
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.17, A:D.283
- Salt bridges: A:R.321
SO4.9: 8 residues within 4Å:- Chain C: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, R.321
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.17, C:D.17, C:D.283
- Salt bridges: C:R.321
SO4.15: 8 residues within 4Å:- Chain E: D.17, A.282, D.283, Y.284, V.285, F.286, A.299, R.321
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.17, E:D.283
- Salt bridges: E:R.321
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.6: 5 residues within 4Å:- Chain B: T.18, Q.19, S.230
- Chain D: N.260
- Ligands: 3ZK.5
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.19, B:S.230
DMS.12: 5 residues within 4Å:- Chain D: T.18, Q.19, S.230
- Chain F: N.260
- Ligands: 3ZK.11
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.19, D:S.230
DMS.18: 5 residues within 4Å:- Chain B: N.260
- Chain F: T.18, Q.19, S.230
- Ligands: 3ZK.17
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Q.19, F:S.230
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lorthiois, E. et al., trans-(3S,4S)-Disubstituted pyrrolidines as inhibitors of the human aspartyl protease renin. Part I: Prime site exploration using an amino linker. Bioorg.Med.Chem.Lett. (2015)
- Release Date
- 2015-03-25
- Peptides
- Renin: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
SMTL ID : 4ryc.3 (2 other biounits)
RENIN IN COMPLEXED WITH 4-methoxy-3-(3-methoxypropoxy)-N-{[(3S,4S)-4-{[(4-methylphenyl)sulfonyl]amino}pyrrolidin-3-yl]methyl}-N-(propan-2-yl)benzamide INHIBITOR
Renin
Toggle Identical (ABCDEF)Related Entries With Identical Sequence
1bbs.1 | 1bbs.2 | 1bbs.3 | 1bbs.4 | 1rne.1 | 2bks.1 | 2bks.2 | 2bkt.1 | 2bkt.2 | 2iko.1 | 2iku.1 | 2il2.1 | 2ren.1 | 2v0z.1 | 2v0z.2 | 2v10.1 | 2v10.2 | 2v11.1 | 2v11.2 | 2v12.1 | 2v12.2 | 2v13.1 | 2v16.1 | 3g72.1 | 3g72.2 | 3g72.3 | 3oot.1 | 3oot.2 | 3oqf.1 | 3oqf.2 more...less...3oqk.1 | 3oqk.2 | 3q3t.1 | 3q3t.2 | 3q4b.1 | 3q4b.2 | 3q5h.1 | 3q5h.2 | 3sfc.1 | 3sfc.2 | 3sfc.3 | 3sfc.4 | 3sfc.5 | 3vsw.1 | 3vsw.2 | 3vsw.3 | 3vsw.4 | 3vsw.5 | 3vsx.1 | 3vsx.2 | 3vsx.3 | 3vuc.1 | 3vuc.2 | 3vuc.3 | 3vyd.1 | 3vyd.2 | 3vyd.3 | 3vye.1 | 3vye.2 | 3vye.3 | 3vyf.1 | 3vyf.2 | 3vyf.3 | 4gj5.1 | 4gj5.2 | 4gj6.1 | 4gj6.2 | 4gj7.1 | 4gj7.2 | 4gj8.1 | 4gj8.2 | 4gj9.1 | 4gj9.2 | 4gja.1 | 4gja.2 | 4gjb.1 | 4gjb.2 | 4gjc.1 | 4gjc.2 | 4gjd.1 | 4gjd.2 | 4pyv.1 | 4pyv.2 | 4q1n.1 | 4q1n.2 | 4q1n.3 | 4ryc.1 | 4ryc.2 | 4ryg.1 | 4ryg.2 | 4ryg.3 | 4rz1.1 | 4rz1.2 | 4rz1.3 | 4s1g.1 | 4s1g.2 | 4s1g.3 | 4xx3.1 | 4xx3.2 | 4xx3.3 | 4xx3.4 | 4xx3.5 | 4xx4.1 | 4xx4.2 | 4xx4.3 | 4xx4.4 | 4xx4.5 | 5sy2.1 | 5sy2.2 | 5sy2.3 | 7xgk.1 | 7xgk.2 | 7xgo.1 | 7xgo.2 | 7xgp.1 | 7xgp.2