SMTL ID : 4ryn.1

Crystal structure of BcTSPO, type1 monomer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

9 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)

MPG.1: 5 residues within 4Å: Chain A: L.143, I.146, M.147, S.150, L.165 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.143, A:I.146, A:L.165 MPG.2: 7 residues within 4Å: Chain A: V.81, L.85, L.88, I.92, N.96, S.153 Ligands: LMU.10 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.81, A:L.85, A:L.88 Hydrogen bonds: A:N.96, A:S.153 MPG.3: 3 residues within 4Å: Chain A: F.39, G.84 Ligands: LMU.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.39 MPG.4: 4 residues within 4Å: Chain A: W.68, L.165, W.166, F.169 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.166, A:F.169, A:F.169 MPG.5: 2 residues within 4Å: Chain A: V.51, L.52 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.52 MPG.6: 2 residues within 4Å: Chain A: Y.94 Ligands: MPG.8 No protein-ligand interaction detected (PLIP) MPG.7: 2 residues within 4Å: Chain A: K.102, F.106 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.102, A:F.106, A:F.106, A:F.106 MPG.8: 5 residues within 4Å: Chain A: K.33, S.34, I.36, I.37 Ligands: MPG.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.33, A:I.37 MPG.9: 3 residues within 4Å: Chain A: Y.47, V.48, V.51 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.47, A:V.48

1 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)

LMU.10: 13 residues within 4Å: Chain A: V.28, M.29, F.30, M.31, S.35, F.39, F.40, I.92, N.95, N.96, Y.97 Ligands: MPG.2, MPG.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.39, A:F.39, A:F.40, A:I.92, A:N.95 Hydrogen bonds: A:F.30, A:F.30, A:N.95, A:N.96, A:N.96 Water bridges: A:F.30, A:Y.97, A:Y.97

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.11: 3 residues within 4Å: Chain A: A.62, L.63, E.64 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 7 residues within 4Å: Chain A: S.49, W.79, N.115, F.118, S.119, W.166, A.170 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Protein structure. Structure and activity of tryptophan-rich TSPO proteins. Science (2015)

Release Date

2015-02-11

Peptides

Integral membrane protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Integral membrane protein

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