SMTL ID : 4rzm.2 (2 other biounits)

Crystal structure of the Lsd19-lasalocid A complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x LSD: Lasalocid A(Non-covalent)

LSD.1: 17 residues within 4Å: Chain A: D.173, S.177, W.178, R.180, H.189, M.192, A.193, S.196, V.198, M.222, S.227, L.231, H.234, L.236, I.252, Y.254, W.273 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.178, A:M.192, A:V.198, A:L.236, A:Y.254 Hydrogen bonds: A:R.180, A:R.180, A:H.189 Water bridges: A:D.173

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: H.149, I.153, D.173, H.189, E.200, Y.254, M.256, M.269, A.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.173, A:E.200

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain A: T.201, A.202, G.203, T.217, V.218, S.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.217, A:S.219 Water bridges: A:V.218 FMT.4: 4 residues within 4Å: Chain A: H.3, P.5, E.113, G.115 No protein-ligand interaction detected (PLIP) FMT.5: 2 residues within 4Å: Chain A: E.68, L.84 No protein-ligand interaction detected (PLIP) FMT.6: 3 residues within 4Å: Chain A: H.235, A.275 Ligands: NA.8 No protein-ligand interaction detected (PLIP) FMT.7: 2 residues within 4Å: Chain A: H.77 Ligands: NA.8 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 3 residues within 4Å: Chain A: H.235 Ligands: FMT.6, FMT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.235 NA.9: 4 residues within 4Å: Chain A: V.126, T.127, S.129, T.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.129, A:T.132

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wong, F.T. et al., Epoxide hydrolase-lasalocid a structure provides mechanistic insight into polyether natural product biosynthesis. J.Am.Chem.Soc. (2015)

Release Date

2015-01-21

Peptides

Epoxide hydrolase LasB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Epoxide hydrolase LasB

Related Entries With Identical Sequence