SMTL ID : 4s0w.1 (2 other biounits)

Wild type T4 lysozyme structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Q.141, T.142, P.143, N.144, R.145 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.144, A:N.144, A:R.145 SO4.2: 3 residues within 4Å: Chain A: R.14, L.15, K.16 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.14, A:L.15, A:K.16 Water bridges: A:L.13, A:K.16, A:K.16 Salt bridges: A:K.16 SO4.3: 4 residues within 4Å: Chain A: V.94, T.157, W.158, D.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.158 SO4.8: 3 residues within 4Å: Chain B: N.144, R.148 Ligands: GOL.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.144 Water bridges: B:R.148 Salt bridges: B:R.148

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 12 residues within 4Å: Chain A: G.30, H.31, L.32, K.35, D.70, V.103, F.104, Q.105, M.106, G.107 Chain B: T.109, G.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.32 Water bridges: A:M.106, A:M.106 Salt bridges: A:K.35 EPE.9: 12 residues within 4Å: Chain A: T.109, G.110 Chain B: G.30, H.31, L.32, K.35, D.70, V.103, F.104, Q.105, M.106, G.107 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.32, B:M.106 Water bridges: B:H.31, B:K.35 Salt bridges: B:K.35

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: S.36, P.37 Chain B: F.114, N.116, S.117, N.132 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: F.114, N.116, S.117, N.132, L.133 Chain B: S.36, P.37 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain A: Y.24, K.35 Chain B: F.114, S.136, R.137, W.138 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: N.144, R.148 Ligands: SO4.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148, A:R.148 GOL.11: 4 residues within 4Å: Chain B: L.13, R.14, L.15, K.16 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.14, B:L.15, B:K.16 GOL.12: 8 residues within 4Å: Chain B: T.21, T.142, P.143, N.144, R.145, A.146, R.148 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.21, B:T.142, B:N.144, B:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snell, E.H. et al., Wild type T4 lysozyme structure. To be Published

Release Date

2015-02-04

Peptides

Lysozyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysozyme

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