SMTL ID : 4s0x.1

Structure of three phase partition - treated lipase from Thermomyces lanuginosa in complex with lauric acid at 2.1 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.33, A.47, D.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.33 Water bridges: A:A.49, A:A.49 NAG.8: 2 residues within 4Å: Chain B: N.33, D.48 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.160, L.185, T.186, Q.188, G.191, T.192, L.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.160, A:R.160, A:L.193, A:L.193 GOL.3: 6 residues within 4Å: Chain A: R.84, S.85, I.86, E.87, G.266, T.267 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.84, A:I.86, A:E.87, A:T.267 Water bridges: A:N.88, A:C.268 GOL.4: 4 residues within 4Å: Chain A: N.11, P.229, V.230, F.262 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.11, A:V.230, A:V.230 Water bridges: A:Q.15, A:Q.15 GOL.5: 4 residues within 4Å: Chain A: L.93, N.94, F.95, F.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.93, A:F.95 GOL.9: 3 residues within 4Å: Chain B: F.7, T.231, R.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.232 GOL.10: 3 residues within 4Å: Chain B: D.57, S.58, G.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.58, B:G.59

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 4 residues within 4Å: Chain A: N.92, L.93, N.94, H.110 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.93 Hydrogen bonds: A:N.94 Water bridges: A:G.112, A:G.112 Salt bridges: A:H.110 ACT.12: 5 residues within 4Å: Chain B: N.92, L.93, N.94, H.110, G.112 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.94 Water bridges: B:W.89 Salt bridges: B:H.110

1 x DAO: LAURIC ACID(Non-covalent)

DAO.7: 12 residues within 4Å: Chain A: D.62, V.63, T.64, R.81, G.82, S.83, R.84, S.85, N.88, W.89, L.147, L.151 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.63, A:R.84, A:L.147, A:L.151 Hydrogen bonds: A:S.83, A:S.85

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 5 residues within 4Å: Chain A: L.227 Chain B: Q.15, N.39, P.42, F.262 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.15, B:F.262, A:L.227 Water bridges: B:N.11

1 x XXH: 4-nitrobenzaldehyde(Non-covalent)

XXH.13: 8 residues within 4Å: Chain B: D.5, N.8, Q.9, L.12, F.13, N.73, L.75, R.139 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.8, B:Q.9, B:L.12 Hydrogen bonds: B:N.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., Structure of three phase partition - treated lipase from Thermomyces lanuginosa in complex with lauric acid at 2.1 A resolution. To be Published

Release Date

2015-02-11

Peptides

Lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipase

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