SMTL ID : 4s1c.3 (2 other biounits)

Crystal Structure of L. monocytogenes phosphodiesterase PgpH HD domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.21, H.50, D.51, D.155 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.21, A:H.50, A:D.51, A:D.155, H2O.3 FE.2: 5 residues within 4Å: Chain A: D.51, H.87, H.111, H.112 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.51, A:H.87, A:H.111, A:H.112, H2O.3 FE.3: 5 residues within 4Å: Chain B: D.51, H.87, H.111, H.112 Ligands: FE.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.51, B:H.87, B:H.111, B:H.112, H2O.6 FE.4: 5 residues within 4Å: Chain B: H.21, H.50, D.51, D.155 Ligands: FE.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.21, B:H.50, B:D.51, B:D.155, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huynh, T.N. et al., An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-02-11

Peptides

Lmo1466 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Lmo1466 protein

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