SMTL ID : 4s1d.4 (3 other biounits)

Structure of IgG1 Fab fragment in complex with Biotincytidinamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.24, S.25, G.26, K.30, N.77 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.26, A:N.77 Water bridges: A:F.27, A:F.27, A:F.27, A:F.27 Salt bridges: A:K.30

1 x 41M: N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysinamide(Non-covalent)

41M.2: 14 residues within 4Å: Chain A: N.29, D.31, T.32, F.33, Q.35, W.99, W.106 Chain B: Y.32, L.33, S.34, Y.49, S.50, F.91, Y.96 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:D.31, A:F.33, A:W.99, A:W.99, B:F.91, B:Y.96 Hydrogen bonds: A:N.29, A:N.29, A:F.33, B:S.34, B:S.34, B:S.50, B:S.50 pi-Stacking: A:W.106, A:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dengl, S. et al., Hapten-directed spontaneous disulfide shuffling: a universal technology for site-directed covalent coupling of payloads to antibodies. Faseb J. (2015)

Release Date

2015-03-04

Peptides

MAB M33 FAB FRAGMENT, heavy chain: A
MAB M33 FAB FRAGMENT, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

MAB M33 FAB FRAGMENT, heavy chain

MAB M33 FAB FRAGMENT, light chain

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