SMTL ID : 4s1g.3 (2 other biounits)

Renin in complex with (S)-1-(3-fluoro-5-(((S)-1-phenylethyl)carbamoyl)benzyl)-4-isopropyl-4-methyl-6-oxotetrahydropyrimidin-2(1H)-iminium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.75, M.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.75 NAG.3: 2 residues within 4Å: Chain B: N.75, M.107 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain C: N.75, M.107 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.75 NAG.7: 2 residues within 4Å: Chain D: N.75, M.107 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain E: N.75, M.107 1 PLIP interactions: 1 interactions with chain E Water bridges: E:N.75 NAG.11: 2 residues within 4Å: Chain F: N.75, M.107 No protein-ligand interaction detected (PLIP)

6 x 43T: 3-{[(4S)-2-amino-4-methyl-6-oxo-4-(propan-2-yl)-5,6-dihydropyrimidin-1(4H)-yl]methyl}-5-fluoro-N-[(1S)-1-phenylethyl]benzamide(Non-covalent)

43T.2: 16 residues within 4Å: Chain A: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.19, A:Y.83, A:Y.83, A:T.85, A:P.118, A:P.118, A:A.122 Hydrogen bonds: A:S.84, A:T.85, A:G.228, A:S.230 Water bridges: A:S.230 Salt bridges: A:D.38, A:D.226 pi-Stacking: A:F.124 43T.4: 16 residues within 4Å: Chain B: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Q.19, B:Y.83, B:Y.83, B:T.85, B:P.118, B:P.118, B:A.122 Hydrogen bonds: B:S.84, B:T.85, B:G.228, B:S.230 Salt bridges: B:D.38, B:D.226 pi-Stacking: B:F.124 43T.6: 16 residues within 4Å: Chain C: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Q.19, C:Y.83, C:Y.83, C:T.85, C:P.118, C:P.118, C:A.122 Hydrogen bonds: C:S.84, C:T.85, C:G.228, C:S.230 Water bridges: C:S.230 Salt bridges: C:D.38, C:D.226 pi-Stacking: C:F.124 43T.8: 16 residues within 4Å: Chain D: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:Q.19, D:Y.83, D:Y.83, D:T.85, D:P.118, D:P.118, D:A.122 Hydrogen bonds: D:S.84, D:T.85, D:G.228, D:S.230 Salt bridges: D:D.38, D:D.226 pi-Stacking: D:F.124 43T.10: 16 residues within 4Å: Chain E: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:Q.19, E:Y.83, E:Y.83, E:T.85, E:P.118, E:P.118, E:A.122 Hydrogen bonds: E:S.84, E:T.85, E:G.228, E:S.230 Water bridges: E:S.230 Salt bridges: E:D.38, E:D.226 pi-Stacking: E:F.124 43T.12: 16 residues within 4Å: Chain F: T.18, Q.19, D.38, G.40, Y.83, S.84, T.85, P.118, A.122, F.124, D.226, G.228, A.229, S.230, H.301, M.303 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:Q.19, F:Y.83, F:Y.83, F:T.85, F:P.118, F:P.118, F:A.122 Hydrogen bonds: F:S.84, F:T.85, F:G.228, F:S.230 Salt bridges: F:D.38, F:D.226 pi-Stacking: F:F.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKittrick, B.A. et al., Iminopyrimidinones: A novel pharmacophore for the development of orally active renin inhibitors. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-02-25

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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