SMTL ID : 4s1k.1

Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 11 residues within 4Å: Chain A: D.151, L.152, P.153, S.154, C.155, G.156, G.157, R.158, L.230, S.234 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.151, A:S.154, A:C.155, A:G.156, A:G.156, A:R.158, A:S.234 Water bridges: A:C.159, A:I.236 ATP.3: 11 residues within 4Å: Chain B: D.151, L.152, P.153, S.154, C.155, G.156, G.157, R.158, L.230, S.234 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.151, B:D.151, B:S.154, B:C.155, B:G.156, B:G.156, B:R.158, B:S.234 Water bridges: B:C.159, B:I.236 ATP.5: 11 residues within 4Å: Chain C: D.151, L.152, P.153, S.154, C.155, G.156, G.157, R.158, L.230, S.234 Ligands: MG.6 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:D.151, C:D.151, C:S.154, C:C.155, C:G.156, C:G.156, C:R.158, C:S.234 Water bridges: C:C.159, C:I.236

3 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ATP.3 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: ATP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ginn, H.M. et al., Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. Nat Commun (2015)

Release Date

2015-03-25

Peptides

Polyhedrin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Polyhedrin

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