SMTL ID : 4toc.1

2.25A resolution structure of Iron Bound BfrB (Q151L) from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-24-mer

Ligands

120 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: R.39, H.153 Chain X: H.155 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: A:H.153, X:H.155, H2O.2 FE2.2: 3 residues within 4Å: Chain A: H.155 Chain L: R.39, H.153 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: A:H.155, L:H.153, H2O.40, H2O.42 FE2.3: 4 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127 FE2.4: 2 residues within 4Å: Chain A: H.10, H.107 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.10, A:H.107, H2O.2, H2O.2, H2O.4 FE2.5: 4 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.94, A:E.127, H2O.3 FE2.6: 3 residues within 4Å: Chain A: D.118, D.122 Chain H: E.125 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: A:D.118, H:E.125, H2O.2 FE2.9: 3 residues within 4Å: Chain B: R.39, H.153 Chain D: H.155 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: B:H.153, D:H.155, H2O.4 FE2.10: 4 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.18, B:E.18, B:E.51, B:H.54, B:E.127 FE2.11: 4 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.94, B:E.94, B:E.127, H2O.6 FE2.12: 2 residues within 4Å: Chain B: H.10, H.107 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.10, B:H.107, H2O.5, H2O.5, H2O.5 FE2.13: 4 residues within 4Å: Chain B: D.118, D.122 Chain L: E.125 Ligands: SO4.15 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.118, B:D.122 FE2.14: 3 residues within 4Å: Chain B: E.125 Chain C: D.118, D.122 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:E.125, C:D.118, H2O.4 FE2.16: 2 residues within 4Å: Chain C: H.155 Chain U: H.153 2 PLIP interactions: 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:H.153, H2O.71 FE2.17: 5 residues within 4Å: Chain C: E.18, E.51, H.54, I.123, E.127 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.18, C:E.51, C:E.51, C:H.54, C:E.127 FE2.18: 4 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.94, C:E.94, C:E.127, H2O.9 FE2.19: 2 residues within 4Å: Chain C: H.10, H.107 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.10, C:H.107, H2O.9, H2O.9, H2O.9 FE2.21: 4 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127 FE2.22: 3 residues within 4Å: Chain D: R.39, H.153 Chain F: H.155 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: F:H.155, D:H.153, H2O.11 FE2.23: 2 residues within 4Å: Chain D: H.10, H.107 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:H.10, D:H.107, H2O.11, H2O.11, H2O.12, H2O.12 FE2.24: 4 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.51, D:E.94, D:E.127, H2O.10, H2O.13 FE2.25: 4 residues within 4Å: Chain D: D.118, D.122 Chain U: E.125 Ligands: SO4.26 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.118 FE2.27: 3 residues within 4Å: Chain E: H.155 Chain J: R.39, H.153 4 PLIP interactions: 1 interactions with chain E, 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: E:H.155, J:H.153, H2O.33, H2O.35 FE2.28: 5 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: FE2.29 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:E.51, E:E.127 FE2.29: 5 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: FE2.28 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127 FE2.30: 2 residues within 4Å: Chain E: H.10, H.107 6 PLIP interactions: 2 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:H.10, E:H.107, H2O.14, H2O.16, H2O.16, H2O.16 FE2.31: 2 residues within 4Å: Chain E: E.125 Chain U: D.118 5 PLIP interactions: 1 interactions with chain E, 1 interactions with chain U, 3 Ligand-Water interactions Metal complexes: E:E.125, U:D.118, H2O.10, H2O.13, H2O.71 FE2.32: 4 residues within 4Å: Chain D: E.125 Chain E: D.118, D.122 Ligands: SO4.26 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.118, E:D.122, H2O.13, H2O.16 FE2.34: 5 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 Ligands: FE2.35 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127 FE2.35: 5 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 Ligands: FE2.34 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.51, F:E.94, F:E.127, H2O.17, H2O.20 FE2.36: 2 residues within 4Å: Chain F: H.10, H.107 6 PLIP interactions: 2 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:H.10, F:H.107, H2O.18, H2O.18, H2O.19, H2O.19 FE2.38: 3 residues within 4Å: Chain G: H.155 Chain W: R.39, H.153 3 PLIP interactions: 1 interactions with chain W, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: W:H.153, G:H.155, H2O.77 FE2.39: 4 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.18, G:E.51, G:E.51, G:H.54, G:E.127 FE2.40: 2 residues within 4Å: Chain G: H.153 Chain I: H.155 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: I:H.155, G:H.153, H2O.21 FE2.41: 4 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.51, G:E.94, G:E.127, H2O.23 FE2.42: 2 residues within 4Å: Chain G: H.10, H.107 5 PLIP interactions: 2 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:H.10, G:H.107, H2O.21, H2O.22, H2O.22 FE2.43: 3 residues within 4Å: Chain G: D.118, D.122 Ligands: SO4.37 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.118, G:D.122 FE2.44: 3 residues within 4Å: Chain G: E.125 Chain J: D.118, D.122 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: G:E.125, J:D.118, H2O.18, H2O.35 FE2.45: 3 residues within 4Å: Chain B: H.155 Chain H: R.39, H.153 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: H:H.153, B:H.155, H2O.25 FE2.46: 3 residues within 4Å: Chain F: R.39, H.153 Chain H: H.155 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: H:H.155, F:H.153, H2O.20, H2O.20 FE2.47: 5 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 Ligands: FE2.48 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 FE2.48: 6 residues within 4Å: Chain H: Y.25, E.51, E.94, E.127, H.130 Ligands: FE2.47 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.51, H:E.94, H:E.127, H2O.26 FE2.49: 2 residues within 4Å: Chain H: H.10, H.107 6 PLIP interactions: 2 interactions with chain H, 4 Ligand-Water interactions Metal complexes: H:H.10, H:H.107, H2O.26, H2O.26, H2O.26, H2O.26 FE2.51: 5 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 Ligands: FE2.54 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127 FE2.52: 3 residues within 4Å: Chain I: R.39, H.153 Chain O: H.155 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:H.153, H2O.30, H2O.31 FE2.53: 2 residues within 4Å: Chain I: H.10, H.107 5 PLIP interactions: 2 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:H.10, I:H.107, H2O.28, H2O.28, H2O.29 FE2.54: 5 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 Ligands: FE2.51 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127 FE2.55: 3 residues within 4Å: Chain I: E.125 Chain P: D.118, D.122 5 PLIP interactions: 1 interactions with chain I, 1 interactions with chain P, 3 Ligand-Water interactions Metal complexes: I:E.125, P:D.118, H2O.30, H2O.53, H2O.56 FE2.56: 3 residues within 4Å: Chain I: D.118, D.122 Chain Q: E.125 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: I:D.118, Q:E.125, H2O.54 FE2.57: 3 residues within 4Å: Chain J: H.155 Chain Q: R.39, H.153 2 PLIP interactions: 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:H.153, H2O.58 FE2.58: 4 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127 FE2.59: 2 residues within 4Å: Chain J: H.10, H.107 6 PLIP interactions: 2 interactions with chain J, 4 Ligand-Water interactions Metal complexes: J:H.10, J:H.107, H2O.32, H2O.32, H2O.34, H2O.34 FE2.60: 5 residues within 4Å: Chain J: Y.25, E.51, E.94, E.127, H.130 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.51, J:E.94, J:E.127, H2O.32, H2O.34 FE2.61: 3 residues within 4Å: Chain F: D.118, D.122 Chain J: E.125 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: F:D.118, J:E.125, H2O.19, H2O.20 FE2.63: 3 residues within 4Å: Chain C: R.39, H.153 Chain K: H.155 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: K:H.155, C:H.153, H2O.8, H2O.9 FE2.64: 2 residues within 4Å: Chain K: H.153 Chain S: H.155 4 PLIP interactions: 1 interactions with chain K, 3 Ligand-Water interactions Metal complexes: K:H.153, H2O.36, H2O.39, H2O.66 FE2.65: 4 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.18, K:E.18, K:E.51, K:E.51, K:E.127 FE2.66: 2 residues within 4Å: Chain K: H.10, H.107 6 PLIP interactions: 2 interactions with chain K, 4 Ligand-Water interactions Metal complexes: K:H.10, K:H.107, H2O.36, H2O.36, H2O.37, H2O.37 FE2.67: 5 residues within 4Å: Chain K: Y.25, E.51, E.94, E.127, H.130 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.51, K:E.94, K:E.127, H2O.38, H2O.38 FE2.69: 3 residues within 4Å: Chain L: H.155 Chain M: R.39, H.153 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: L:H.155, M:H.153, H2O.44 FE2.70: 4 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127 FE2.71: 4 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.94, L:E.94, L:E.127 FE2.72: 2 residues within 4Å: Chain L: H.10, H.107 5 PLIP interactions: 2 interactions with chain L, 3 Ligand-Water interactions Metal complexes: L:H.10, L:H.107, H2O.40, H2O.40, H2O.41 FE2.73: 3 residues within 4Å: Chain L: D.118, D.122 Ligands: SO4.15 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.118, L:D.122, H2O.41 FE2.74: 4 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127 FE2.75: 3 residues within 4Å: Chain M: H.155 Chain X: Q.137, H.153 2 PLIP interactions: 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:H.153, H2O.79 FE2.76: 5 residues within 4Å: Chain M: Y.25, E.51, E.94, E.127, H.130 5 PLIP interactions: 4 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, H2O.43 FE2.77: 2 residues within 4Å: Chain M: H.10, H.107 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:H.10, M:H.107, H2O.45, H2O.45 FE2.78: 3 residues within 4Å: Chain K: D.118, D.122 Chain M: E.125 5 PLIP interactions: 1 interactions with chain M, 1 interactions with chain K, 3 Ligand-Water interactions Metal complexes: M:E.125, K:D.118, H2O.38, H2O.43, H2O.45 FE2.81: 5 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 Ligands: FE2.84 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.18, N:E.18, N:E.51, N:E.51, N:E.127 FE2.82: 2 residues within 4Å: Chain N: H.155 Chain T: H.153 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: N:H.155, T:H.153, H2O.67 FE2.83: 2 residues within 4Å: Chain N: H.153 Chain P: H.155 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain P, 2 Ligand-Water interactions Metal complexes: N:H.153, P:H.155, H2O.47, H2O.48 FE2.84: 5 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 Ligands: FE2.81 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.51, N:E.94, N:E.94, H2O.47, H2O.49 FE2.85: 2 residues within 4Å: Chain N: H.10, H.107 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:H.10, N:H.107 FE2.87: 2 residues within 4Å: Chain O: H.153 Chain W: H.155 3 PLIP interactions: 1 interactions with chain O, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: O:H.153, W:H.155, H2O.50 FE2.88: 4 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.18, O:E.51, O:E.51, O:H.54, O:E.127 FE2.89: 4 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 4 PLIP interactions: 3 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:E.94, O:E.127, O:H.130, H2O.52 FE2.90: 2 residues within 4Å: Chain O: H.10, H.107 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:H.10, O:H.107 FE2.91: 3 residues within 4Å: Chain O: D.118, D.122 Ligands: SO4.86 3 PLIP interactions: 2 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:D.118, O:D.122, H2O.52 FE2.92: 4 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.18, P:E.18, P:E.51, P:E.51, P:E.127 FE2.93: 4 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 3 PLIP interactions: 2 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.94, P:E.127, H2O.56 FE2.94: 2 residues within 4Å: Chain P: H.10, H.107 6 PLIP interactions: 2 interactions with chain P, 4 Ligand-Water interactions Metal complexes: P:H.10, P:H.107, H2O.55, H2O.55, H2O.55, H2O.55 FE2.95: 4 residues within 4Å: Chain P: E.125 Chain Q: D.118, D.122 Ligands: SO4.97 4 PLIP interactions: 1 interactions with chain P, 1 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: P:E.125, Q:D.118, H2O.54, H2O.56 FE2.98: 2 residues within 4Å: Chain Q: H.10, H.107 5 PLIP interactions: 2 interactions with chain Q, 3 Ligand-Water interactions Metal complexes: Q:H.10, Q:H.107, H2O.59, H2O.59, H2O.59 FE2.99: 5 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: FE2.100 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127 FE2.100: 6 residues within 4Å: Chain Q: Y.25, E.51, E.94, E.127, H.130 Ligands: FE2.99 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.51, Q:E.94, Q:E.127, H2O.57, H2O.59 FE2.102: 3 residues within 4Å: Chain P: R.39, H.153 Chain R: H.155 3 PLIP interactions: 1 interactions with chain R, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: R:H.155, P:H.153, H2O.55 FE2.103: 3 residues within 4Å: Chain R: R.39, H.153 Chain T: H.155 3 PLIP interactions: 1 interactions with chain T, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: T:H.155, R:H.153, H2O.62 FE2.104: 5 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 Ligands: FE2.106 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:E.51, R:E.127 FE2.105: 2 residues within 4Å: Chain R: H.10, H.107 5 PLIP interactions: 2 interactions with chain R, 3 Ligand-Water interactions Metal complexes: R:H.10, R:H.107, H2O.62, H2O.62, H2O.62 FE2.106: 6 residues within 4Å: Chain R: Y.25, E.51, E.94, E.127, H.130 Ligands: FE2.104 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.51, R:E.94, R:E.127 FE2.107: 4 residues within 4Å: Chain R: E.125 Chain S: D.118, D.122 Ligands: SO4.111 4 PLIP interactions: 1 interactions with chain R, 1 interactions with chain S, 2 Ligand-Water interactions Metal complexes: R:E.125, S:D.118, H2O.66, H2O.66 FE2.108: 4 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127 FE2.109: 4 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.127 FE2.110: 2 residues within 4Å: Chain S: H.10, H.107 6 PLIP interactions: 2 interactions with chain S, 4 Ligand-Water interactions Metal complexes: S:H.10, S:H.107, H2O.65, H2O.65, H2O.65, H2O.65 FE2.112: 5 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 Ligands: FE2.113 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127 FE2.113: 5 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 Ligands: FE2.112 5 PLIP interactions: 4 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, H2O.68 FE2.114: 2 residues within 4Å: Chain T: H.10, H.107 4 PLIP interactions: 2 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:H.10, T:H.107, H2O.68, H2O.68 FE2.115: 3 residues within 4Å: Chain M: D.118, D.122 Chain T: E.125 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: M:D.118, T:E.125, H2O.45 FE2.116: 4 residues within 4Å: Chain K: E.125 Chain T: D.118, D.122 Ligands: SO4.80 4 PLIP interactions: 2 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:D.118, T:D.122, H2O.36, H2O.68 FE2.118: 3 residues within 4Å: Chain S: R.39, H.153 Chain U: H.155 3 PLIP interactions: 1 interactions with chain S, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: S:H.153, U:H.155, H2O.65 FE2.119: 5 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 Ligands: FE2.121 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.18, U:E.18, U:E.51, U:H.54, U:E.127 FE2.120: 2 residues within 4Å: Chain U: H.10, H.107 6 PLIP interactions: 2 interactions with chain U, 4 Ligand-Water interactions Metal complexes: U:H.10, U:H.107, H2O.71, H2O.71, H2O.71, H2O.71 FE2.121: 6 residues within 4Å: Chain U: Y.25, E.51, E.94, E.127, H.130 Ligands: FE2.119 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.51, U:E.94, U:E.127 FE2.123: 3 residues within 4Å: Chain E: R.39, H.153 Chain V: H.155 5 PLIP interactions: 1 interactions with chain V, 4 Ligand-Water interactions Metal complexes: V:H.155, H2O.15, H2O.17, H2O.17, H2O.74 FE2.124: 2 residues within 4Å: Chain Q: H.155 Chain V: H.153 2 PLIP interactions: 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:H.153, H2O.73 FE2.125: 4 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.51, V:E.51, V:H.54, V:E.127 FE2.126: 2 residues within 4Å: Chain V: H.10, H.107 4 PLIP interactions: 1 interactions with chain V, 3 Ligand-Water interactions Metal complexes: V:H.107, H2O.74, H2O.74, H2O.74 FE2.127: 4 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 4 PLIP interactions: 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.94, V:E.127, V:H.130, H2O.74 FE2.128: 3 residues within 4Å: Chain R: D.118, D.122 Chain V: E.125 5 PLIP interactions: 1 interactions with chain V, 1 interactions with chain R, 3 Ligand-Water interactions Metal complexes: V:E.125, R:D.118, H2O.63, H2O.64, H2O.66 FE2.129: 3 residues within 4Å: Chain V: D.118, D.122 Ligands: SO4.111 2 PLIP interactions: 2 interactions with chain V Metal complexes: V:D.118, V:D.122 FE2.130: 4 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.18, W:E.18, W:E.51, W:E.51, W:E.127 FE2.131: 2 residues within 4Å: Chain W: H.10, H.107 4 PLIP interactions: 2 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:H.10, W:H.107, H2O.76, H2O.78 FE2.132: 5 residues within 4Å: Chain W: Y.25, E.51, E.94, E.127, H.130 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.51, W:E.94, W:E.94, W:E.127, H2O.77 FE2.133: 3 residues within 4Å: Chain H: D.118 Chain W: E.125 Ligands: SO4.8 4 PLIP interactions: 1 interactions with chain W, 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: W:E.125, H:D.118, H2O.2, H2O.26 FE2.134: 3 residues within 4Å: Chain W: D.118, D.122 Ligands: SO4.8 4 PLIP interactions: 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:D.118, W:D.122, W:D.122, H2O.78 FE2.136: 4 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127 FE2.137: 4 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 3 PLIP interactions: 2 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.94, X:E.127, H2O.81 FE2.138: 2 residues within 4Å: Chain X: H.10, H.107 5 PLIP interactions: 2 interactions with chain X, 3 Ligand-Water interactions Metal complexes: X:H.10, X:H.107, H2O.80, H2O.80, H2O.80 FE2.139: 3 residues within 4Å: Chain N: D.118, D.122 Chain X: E.125 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: N:D.118, X:E.125, H2O.49 FE2.140: 3 residues within 4Å: Chain X: D.118, D.122 Ligands: SO4.86 4 PLIP interactions: 2 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:D.118, X:D.122, H2O.80, H2O.81

12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.7: 18 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 17 PLIP interactions: 7 interactions with chain A, 10 interactions with chain B, Hydrophobic interactions: A:L.19, A:F.26, A:F.26, A:M.52, A:A.55, A:I.59, B:L.19, B:I.22, B:I.22, B:F.26, B:F.26, B:F.26, B:I.49, B:I.49, B:M.52 Salt bridges: A:K.53, B:K.53 HEM.20: 18 residues within 4Å: Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 18 PLIP interactions: 8 interactions with chain D, 10 interactions with chain C, Hydrophobic interactions: D:L.19, D:I.22, D:I.22, D:F.26, D:F.26, D:F.26, D:M.52, C:L.19, C:F.26, C:Y.45, C:I.49, C:I.49, C:M.52, C:A.55, C:I.59 Salt bridges: D:K.53, C:K.53 Water bridges: C:Y.45 HEM.33: 18 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 18 PLIP interactions: 12 interactions with chain E, 6 interactions with chain F, Hydrophobic interactions: E:L.19, E:I.22, E:I.22, E:F.26, E:F.26, E:I.49, E:I.49, E:M.52, E:A.55, E:I.59, F:L.19, F:F.26, F:F.26, F:I.49, F:M.52 Water bridges: E:K.53 Salt bridges: E:K.53, F:K.53 HEM.50: 17 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 17 PLIP interactions: 8 interactions with chain H, 9 interactions with chain G, Hydrophobic interactions: H:L.19, H:F.26, H:F.26, H:I.49, H:M.52, H:A.55, H:I.59, G:L.19, G:I.22, G:I.22, G:F.26, G:F.26, G:I.49, G:I.49, G:M.52 Salt bridges: H:K.53, G:K.53 HEM.62: 17 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, I.59 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 17 PLIP interactions: 8 interactions with chain J, 9 interactions with chain I, Hydrophobic interactions: J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:F.26, J:M.52, I:L.19, I:I.22, I:F.26, I:F.26, I:I.49, I:M.52, I:A.55, I:I.59 Salt bridges: J:K.53, I:K.53 HEM.68: 19 residues within 4Å: Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 18 PLIP interactions: 8 interactions with chain L, 10 interactions with chain K, Hydrophobic interactions: L:L.19, L:I.22, L:F.26, L:F.26, L:F.26, L:M.52, L:L.71, K:L.19, K:I.22, K:I.22, K:F.26, K:F.26, K:I.49, K:M.52, K:A.55, K:I.59 Salt bridges: L:K.53, K:K.53 HEM.79: 17 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, I.59 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 18 PLIP interactions: 8 interactions with chain M, 10 interactions with chain N, Hydrophobic interactions: M:L.19, M:F.26, M:F.26, M:I.49, M:M.52, M:A.55, M:I.59, N:L.19, N:I.22, N:I.22, N:F.26, N:F.26, N:I.49, N:M.52 Salt bridges: M:K.53, N:K.53 Water bridges: N:Y.45, N:K.53 HEM.96: 18 residues within 4Å: Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 18 PLIP interactions: 10 interactions with chain O, 8 interactions with chain P, Hydrophobic interactions: O:L.19, O:I.22, O:F.26, O:F.26, O:I.49, O:I.49, O:M.52, O:A.55, O:I.59, P:L.19, P:I.22, P:I.22, P:F.26, P:F.26, P:I.49, P:M.52 Salt bridges: O:K.53, P:K.53 HEM.101: 17 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 7 interactions with chain R, 9 interactions with chain Q, Hydrophobic interactions: R:L.19, R:I.22, R:F.26, R:F.26, R:I.49, R:I.49, R:M.52, Q:L.19, Q:I.22, Q:F.26, Q:F.26, Q:I.49, Q:M.52, Q:A.55, Q:I.59 Salt bridges: Q:K.53 HEM.117: 19 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 20 PLIP interactions: 10 interactions with chain S, 10 interactions with chain T, Hydrophobic interactions: S:L.19, S:I.22, S:I.22, S:F.26, S:F.26, S:I.49, S:M.52, S:A.55, S:I.59, T:L.19, T:I.22, T:F.26, T:F.26, T:F.26, T:I.49, T:I.49, T:M.52, T:L.71 Salt bridges: S:K.53, T:K.53 HEM.122: 18 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, L.71 16 PLIP interactions: 9 interactions with chain V, 7 interactions with chain U, Hydrophobic interactions: V:L.19, V:I.22, V:F.26, V:F.26, V:F.26, V:I.49, V:I.49, V:M.52, V:L.71, U:L.19, U:I.22, U:F.26, U:M.52, U:A.55, U:I.59 Salt bridges: U:K.53 HEM.135: 18 residues within 4Å: Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 15 PLIP interactions: 6 interactions with chain W, 9 interactions with chain X, Hydrophobic interactions: W:L.19, W:I.22, W:F.26, W:I.49, W:M.52, X:L.19, X:I.22, X:I.22, X:F.26, X:F.26, X:M.52, X:A.55, X:I.59 Salt bridges: W:K.53, X:K.53

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 9 residues within 4Å: Chain A: D.118, K.121 Chain H: D.118, K.121, D.122 Chain W: D.118, K.121 Ligands: FE2.133, FE2.134 6 PLIP interactions: 4 interactions with chain A, 1 interactions with chain H, 1 interactions with chain W Hydrogen bonds: A:D.118 Water bridges: A:K.121, A:K.121 Salt bridges: A:K.121, H:K.121, W:K.121 SO4.15: 9 residues within 4Å: Chain B: D.118, K.121, D.122 Chain C: D.118, K.121 Chain L: D.118, K.121 Ligands: FE2.13, FE2.73 5 PLIP interactions: 2 interactions with chain L, 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: L:D.118 Salt bridges: L:K.121, B:K.121, C:K.121 Water bridges: C:K.121 SO4.26: 9 residues within 4Å: Chain D: K.121 Chain E: D.118, K.121, D.122 Chain U: D.118, K.121, D.122 Ligands: FE2.25, FE2.32 8 PLIP interactions: 3 interactions with chain U, 2 interactions with chain D, 3 interactions with chain E Water bridges: U:K.121, U:K.121, D:K.121, E:K.121 Salt bridges: U:K.121, D:K.121, E:K.121 Hydrogen bonds: E:D.122 SO4.37: 8 residues within 4Å: Chain F: K.121 Chain G: D.118, K.121, D.122 Chain J: D.118, K.121, D.122 Ligands: FE2.43 6 PLIP interactions: 2 interactions with chain F, 1 interactions with chain G, 3 interactions with chain J Water bridges: F:K.121, J:K.121, J:K.121 Salt bridges: F:K.121, G:K.121, J:K.121 SO4.80: 7 residues within 4Å: Chain K: K.121 Chain M: D.118, K.121, D.122 Chain T: D.118, K.121 Ligands: FE2.116 13 PLIP interactions: 2 interactions with chain T, 5 interactions with chain M, 6 interactions with chain K Water bridges: T:K.121, M:K.121, M:K.121, M:K.121, K:K.121, K:K.121, K:K.121, K:K.121 Salt bridges: T:K.121, M:K.121, K:K.121 Hydrogen bonds: M:D.122, K:D.122 SO4.86: 9 residues within 4Å: Chain N: D.118, K.121, D.122 Chain O: K.121, D.122 Chain X: D.118, K.121 Ligands: FE2.91, FE2.140 5 PLIP interactions: 2 interactions with chain O, 1 interactions with chain X, 2 interactions with chain N Hydrogen bonds: O:D.118 Salt bridges: O:K.121, X:K.121, N:K.121 Water bridges: N:K.121 SO4.97: 8 residues within 4Å: Chain I: D.118, K.121 Chain P: D.118, K.121, D.122 Chain Q: D.118, K.121 Ligands: FE2.95 10 PLIP interactions: 2 interactions with chain Q, 4 interactions with chain P, 4 interactions with chain I Water bridges: Q:K.121, P:K.121, P:K.121, I:K.121, I:K.121, I:K.121 Salt bridges: Q:K.121, P:K.121, I:K.121 Hydrogen bonds: P:D.122 SO4.111: 9 residues within 4Å: Chain R: D.118, K.121, D.122 Chain S: D.118, K.121 Chain V: K.121, D.122 Ligands: FE2.107, FE2.129 10 PLIP interactions: 3 interactions with chain R, 3 interactions with chain V, 4 interactions with chain S Hydrogen bonds: R:D.122, S:D.122 Water bridges: R:K.121, V:K.121, V:K.121, S:K.121, S:K.121 Salt bridges: R:K.121, V:K.121, S:K.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, H. et al., Concerted motions networking pores and distant ferroxidase centers enable bacterioferritin function and iron traffic. Biochemistry (2015)

Release Date

2015-02-11

Peptides

Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Bacterioferritin

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