SMTL ID : 4tq3.4 (3 other biounits)

Structure of a UbiA homolog from Archaeoglobus fulgidus bound to GPP and Mg2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x GPP: GERANYL DIPHOSPHATE(Non-covalent)

GPP.1: 15 residues within 4Å: Chain A: R.22, F.29, W.60, S.64, F.65, N.68, D.72, L.88, Y.139, K.146, N.156, A.159, F.201 Ligands: MG.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.29, A:W.60, A:F.65, A:F.65, A:F.65, A:F.65, A:N.68, A:Y.139, A:Y.139, A:A.159 Hydrogen bonds: A:N.68, A:Y.139, A:Y.139 Salt bridges: A:R.22, A:K.146, A:K.146

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: R.22, N.68, D.72, D.76 Ligands: GPP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.72 MG.3: 3 residues within 4Å: Chain A: D.198, D.202 Ligands: GPP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.198, A:D.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Structure of a Membrane-Embedded Prenyltransferase Homologous to UBIAD1. Plos Biol. (2014)

Release Date

2014-07-16

Peptides

Prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Membrane

We predict this structure to be a membrane protein.
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Prenyltransferase

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