SMTL ID : 4tqo.1 (3 other biounits)

The crystal structure of methanol dehydrogenase from Methylococcus capsulatus (Bath)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.177, N.261, D.303 Ligands: PQQ.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.177, A:E.177, A:D.303 CA.3: 4 residues within 4Å: Chain C: E.177, N.261, D.303 Ligands: PQQ.4 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.177, C:E.177

2 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 21 residues within 4Å: Chain A: E.55, C.103, C.104, V.107, R.109, T.159, A.174, G.175, A.176, E.177, T.241, W.243, N.261, D.303, A.305, R.330, N.393, W.469, G.532, W.533 Ligands: CA.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.469, A:W.533 Hydrogen bonds: A:R.109, A:G.175, A:A.176, A:R.330, A:R.330, A:N.393, A:W.533 Water bridges: A:C.103, A:E.177, A:E.177 Salt bridges: A:R.109, A:R.109 pi-Stacking: A:W.243, A:W.243, A:W.243 PQQ.4: 20 residues within 4Å: Chain C: E.55, C.104, V.107, R.109, T.159, A.174, G.175, A.176, E.177, T.241, W.243, N.261, D.303, R.330, N.393, Q.394, W.469, G.532, W.533 Ligands: CA.3 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:W.533 Hydrogen bonds: C:R.109, C:T.159, C:G.175, C:A.176, C:E.177, C:T.241, C:R.330, C:R.330, C:N.393, C:N.393, C:W.533 Salt bridges: C:R.109, C:R.109 pi-Stacking: C:W.243, C:W.243, C:W.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Culpepper, M.A. et al., Structure and Protein-Protein Interactions of Methanol Dehydrogenase from Methylococcus capsulatus (Bath). Biochemistry (2014)

Release Date

2014-09-24

Peptides

Methanol dehydrogenase protein, large subunit: AC
Methanol dehydrogenase, small subunit: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
G

B
I

D
O

Methanol dehydrogenase protein, large subunit

Methanol dehydrogenase, small subunit

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