SMTL ID : 4tsd.1

Crystal structure of Helicobacter pylori HP1029

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: E.79, H.81, D.86, Q.88, H.145, K.168 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:D.86, A:H.145, H2O.7 ZN.2: 6 residues within 4Å: Chain B: E.79, H.81, D.86, Q.88, H.145, K.168 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.81, B:D.86, B:H.145, H2O.14

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: F.4, G.5, M.135 Chain B: V.100, G.101, N.142, D.143 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.101, B:D.143 Water bridges: B:A.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vallese, F. et al., The crystal structure of Helicobacter pylori HP1029 highlights the functional diversity of the sialic acid-related DUF386 family. Febs J. (2015)

Release Date

2015-06-10

Peptides

HP1029: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

HP1029