SMTL ID : 4tsz.3 (7 other biounits)

Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ACE- GLN- ALC- ASP- LEU- ZCL: ACE-GLN-ALC-ASP-LEU-ZCL peptide(Non-covalent)

ACE-GLN-ALC-ASP-LEU-ZCL.1: 17 residues within 4Å: Chain A: T.173, G.175, H.176, R.177, L.178, P.244, Y.246, V.249, N.322, Y.325, N.346, S.348, V.362, M.364, P.365, M.366, R.367 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.367, A:P.365 Hydrophobic interactions: A:P.365, A:P.244, A:V.249 Water bridges: A:G.175 Halogen bonds: A:T.173 ACE-GLN-ALC-ASP-LEU-ZCL.2: 17 residues within 4Å: Chain B: T.173, G.175, H.176, R.177, L.178, P.244, Y.246, V.249, N.322, Y.325, N.346, S.348, V.362, M.364, P.365, M.366, R.367 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.367, B:P.365 Hydrophobic interactions: B:P.365, B:P.244, B:V.249 Halogen bonds: B:T.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolff, P. et al., Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem. (2014)

Release Date

2014-09-10

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

DNA polymerase III subunit beta

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