SMTL ID : 4tw2.2 (1 other biounit)

Crystal Structure of SCARB2 in Neural Condition (pH7.5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: N.32, V.50, L.96, R.98, T.134 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.4: 9 residues within 4Å: Chain A: Q.27, Y.29, E.49, E.325, D.326, R.346, Y.374, N.376, S.378 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.325 Hydrophobic interactions: A:Y.29

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: Y.81, W.142, N.170 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: E.109, V.113, L.283, N.289, S.291, I.292, Y.352 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.109

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: L.180, D.184, S.185, N.188 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.180 Hydrogen bonds: A:D.184, A:N.188 NAG.6: 6 residues within 4Å: Chain A: K.208, C.209, M.211, N.213, Y.231, S.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dang, M. et al., Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71. Protein Cell (2014)

Release Date

2015-07-08

Peptides

Scavenger receptor class B member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Scavenger receptor class B member 2

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