SMTL ID : 4twa.2 (1 other biounit)

Crystal Structure of Prolyl-tRNA Synthetase (PRS) from Plasmodium falciparum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: F.144, K.145, R.154 Ligands: CL.2 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: K.145, Q.146, R.152 Ligands: CL.1 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.61, P.130, K.132 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.145 Ligands: CL.11 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: K.145, Q.146, R.152 Ligands: CL.10 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: N.61, P.130, K.132 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain C: F.144, K.145, R.154 Ligands: CL.19 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain C: K.145, Q.146, R.152 Ligands: CL.18 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain C: N.61, P.130, K.132 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain D: K.145 Ligands: CL.28 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain D: K.145, Q.146, R.152 Ligands: CL.27 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain D: N.61, P.130, K.132 Ligand excluded by PLIP

22 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.75, R.141, F.144, R.154 Chain C: R.446 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: D.180, R.183, K.196 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: K.299, P.354 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: Y.44 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: R.183, R.184, E.188 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: N.369, N.394, K.398 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain A: R.329, A.330, S.331 Chain B: Y.126, R.127 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: N.369, E.371, N.394, K.398 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain A: K.58 Chain B: Y.44, K.288, K.290, N.323 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain B: R.446 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: K.95, Y.96, G.97 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain A: R.446 Chain C: K.75, R.141, F.144, R.154 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: D.180, R.183, K.196 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain C: K.299, P.354 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain C: Y.44 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: R.183, R.184, E.188 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: N.369, N.394, K.398 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain C: R.329, A.330, S.331 Chain D: Y.126, R.127 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain D: N.369, E.371, N.394, K.398 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain C: K.58 Chain D: Y.44, K.288, K.290, N.323 Ligand excluded by PLIP SO4.33: 1 residues within 4Å: Chain D: R.446 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain D: K.95, Y.96, G.97 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, V. et al., Structural and functional analysis of the anti-malarial drug target prolyl-tRNA synthetase. J. Struct. Funct. Genomics (2014)

Release Date

2014-08-13

Peptides

Proline--tRNA ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Proline--tRNA ligase

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