SMTL ID : 4twp.2 (1 other biounit)

The crystal structure of human abl1 T315I gatekeeper mutant kinase domain in complex with axitinib

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x AXI: AXITINIB(Non-covalent)

AXI.1: 14 residues within 4Å: Chain A: L.16, Y.21, V.24, A.37, K.39, E.84, F.85, M.86, T.87, G.89, N.136, L.138, A.148, D.149 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.16, A:Y.21, A:V.24, A:A.148, A:D.149 Hydrogen bonds: A:Y.21, A:K.39, A:M.86, A:M.86, A:D.149 Water bridges: A:G.151 pi-Stacking: A:Y.21

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: E.120, H.258, E.262 Ligands: NI.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.120, A:E.120, H2O.1 NI.3: 3 residues within 4Å: Chain A: H.258, E.262 Ligands: NI.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.258, A:E.262, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: R.154, Y.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.154, A:Y.161, A:Y.161, A:H.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pemovska, T. et al., Axitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation. Nature (2015)

Release Date

2015-02-11

Peptides

Tyrosine-protein kinase ABL1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase ABL1

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