SMTL ID : 4tx3.1

Complex of the X-domain and OxyB from Teicoplanin Biosynthesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: L.94, M.95, H.102, R.106, L.158, L.161, L.239, A.242, G.243, N.246, V.247, P.289, P.292, T.293, R.295, L.318, A.345, F.346, G.347, I.350, H.351, C.353, L.354, G.355, L.358, T.359 Ligands: EDO.3 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.158, A:L.161, A:L.239, A:A.242, A:N.246, A:V.247, A:P.289, A:P.292, A:L.318, A:F.346, A:L.354, A:L.358, A:T.359 Hydrogen bonds: A:T.293 Water bridges: A:H.351 Salt bridges: A:H.102, A:R.106, A:R.295, A:H.351 Metal complexes: A:C.353

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: Q.384, E.385 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.385 SO4.4: 7 residues within 4Å: Chain B: L.29, A.30, R.31, G.38, R.39, H.142, R.233 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.31, B:G.38, B:R.39 Water bridges: B:H.40, B:H.142 Salt bridges: B:R.39, B:H.142, B:R.233 SO4.5: 2 residues within 4Å: Chain B: D.428, H.429 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.422, B:H.429 Water bridges: B:D.430 SO4.6: 3 residues within 4Å: Chain B: P.14, E.15, R.16 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.15, B:R.16 Salt bridges: B:R.16

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: M.95, N.246, A.291 Ligands: HEM.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.246, A:A.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haslinger, K. et al., X-domain of peptide synthetases recruits oxygenases crucial for glycopeptide biosynthesis. Nature (2015)

Release Date

2015-02-04

Peptides

OxyB protein: A
Peptide synthetase, module 7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

OxyB protein

Peptide synthetase, module 7

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