SMTL ID : 4tyu.1 (1 other biounit)

Homodimeric Single Domain Antibody (sdAb) against Staphylococcal enterotoxin B (SEB)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.10, S.11, G.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.12, A:G.12 Water bridges: A:T.127, A:T.127 SO4.2: 6 residues within 4Å: Chain A: Y.102, Q.125, G.126 Chain B: Y.102, Q.125, G.126 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.102, A:G.126, B:Y.102, B:Y.102, B:G.126 Water bridges: B:R.49 SO4.3: 5 residues within 4Å: Chain B: T.61, Y.63, A.79, D.80, S.81 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.63, B:S.81, B:S.81 Water bridges: B:A.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

George, J. et al., Structural and mutational analysis of a monomeric and dimeric form of a single domain antibody with implications for protein misfolding. Proteins (2014)

Release Date

2014-09-03

Peptides

Single Domain Antibody: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Single Domain Antibody

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