SMTL ID : 4tzw.1

Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.67 Å

Oligo State

monomer

Ligands

36 x SR: STRONTIUM ION(Non-functional Binders)

SR.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.2: 1 residues within 4Å: Chain B: G.3 Ligand excluded by PLIP SR.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.4: 2 residues within 4Å: Chain B: G.39 Ligands: SR.12 Ligand excluded by PLIP SR.5: 2 residues within 4Å: Chain B: G.46, G.47 Ligand excluded by PLIP SR.6: 1 residues within 4Å: Chain B: U.50 Ligand excluded by PLIP SR.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.8: 2 residues within 4Å: Chain B: G.37, G.38 Ligand excluded by PLIP SR.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.10: 2 residues within 4Å: Chain B: U.4, A.5 Ligand excluded by PLIP SR.11: 2 residues within 4Å: Chain B: G.48, A.53 Ligand excluded by PLIP SR.12: 2 residues within 4Å: Chain B: G.40 Ligands: SR.4 Ligand excluded by PLIP SR.13: 2 residues within 4Å: Chain B: G.29 Chain C: A.90 Ligand excluded by PLIP SR.14: 1 residues within 4Å: Chain B: G.29 Ligand excluded by PLIP SR.15: 2 residues within 4Å: Chain B: A.33, G.34 Ligand excluded by PLIP SR.16: 2 residues within 4Å: Chain C: A.42, G.43 Ligand excluded by PLIP SR.17: 2 residues within 4Å: Chain C: C.102 Ligands: SR.36 Ligand excluded by PLIP SR.18: 2 residues within 4Å: Chain C: G.59 Ligands: SR.29 Ligand excluded by PLIP SR.19: 3 residues within 4Å: Chain C: G.52, G.53, A.54 Ligand excluded by PLIP SR.20: 1 residues within 4Å: Chain C: A.11 Ligand excluded by PLIP SR.21: 2 residues within 4Å: Chain C: G.7, G.97 Ligand excluded by PLIP SR.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.23: 1 residues within 4Å: Chain C: U.50 Ligand excluded by PLIP SR.24: 2 residues within 4Å: Chain C: A.17, G.18 Ligand excluded by PLIP SR.25: 1 residues within 4Å: Chain C: G.74 Ligand excluded by PLIP SR.26: 3 residues within 4Å: Chain C: G.7, A.8, U.9 Ligand excluded by PLIP SR.27: 1 residues within 4Å: Chain C: G.43 Ligand excluded by PLIP SR.28: 1 residues within 4Å: Chain C: G.15 Ligand excluded by PLIP SR.29: 2 residues within 4Å: Chain C: G.59 Ligands: SR.18 Ligand excluded by PLIP SR.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.32: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SR.33: 1 residues within 4Å: Chain C: C.79 Ligand excluded by PLIP SR.34: 2 residues within 4Å: Chain C: U.40, U.41 Ligand excluded by PLIP SR.35: 3 residues within 4Å: Chain C: A.16, A.17, A.90 Ligand excluded by PLIP SR.36: 2 residues within 4Å: Chain C: C.102 Ligands: SR.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration. Structure (2014)

Release Date

2014-09-10

Peptides

Ribosome-associated protein L7Ae-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome-associated protein L7Ae-like

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