SMTL ID : 4u4f.1

Structure of GluA2* in complex with partial agonist (S)-5-Nitrowillardiine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.79 Å

Oligo State

homo-tetramer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: Q.328, N.335, K.337, N.346 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: Q.328, N.335, K.337, N.346 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain C: Q.328, E.330, N.335, K.337, N.346 No protein-ligand interaction detected (PLIP)

4 x NWD: 3-(5-nitro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine(Non-covalent)

NWD.4: 12 residues within 4Å: Chain A: E.393, Y.441, P.469, T.471, R.476, G.644, S.645, T.646, L.695, E.696, M.699, Y.723 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.471, A:T.471, A:S.645, A:S.645, A:T.646, A:T.646, A:T.646, A:E.696, A:E.696 Salt bridges: A:R.476 NWD.5: 11 residues within 4Å: Chain B: Y.441, P.469, T.471, R.476, G.644, S.645, T.646, L.695, E.696, M.699, Y.723 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.471, B:T.471, B:S.645, B:S.645, B:S.645, B:T.646, B:T.646, B:T.646, B:E.696, B:E.696, B:T.698 Salt bridges: B:R.476 NWD.6: 13 residues within 4Å: Chain C: E.393, Y.441, P.469, L.470, T.471, R.476, L.641, G.644, S.645, T.646, L.695, E.696, M.699 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Y.441, C:T.471, C:T.471, C:S.645, C:S.645, C:T.646, C:T.646, C:T.646, C:E.696 Salt bridges: C:R.476 NWD.8: 13 residues within 4Å: Chain D: E.393, Y.441, P.469, L.470, T.471, R.476, S.645, T.646, T.677, L.695, E.696, M.699, Y.723 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.471, D:T.471, D:S.645, D:T.646, D:T.646, D:T.646, D:E.696, D:E.696 Salt bridges: D:R.476

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain D: I.345, N.346, E.367 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelshanskaya, M.V. et al., Structure of an agonist-bound ionotropic glutamate receptor. Science (2014)

Release Date

2014-08-27

Peptides

Glutamate receptor 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor 2

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