SMTL ID : 4u5p.1

Crystal structure of native RhCC (YP_702633.1) from Rhodococcus jostii RHA1 at 1.78 Angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-trimer

Ligands

3 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.1: 8 residues within 4Å: Chain A: V.53, A.57, N.58, D.100 Chain C: Q.116, N.135, R.136, P.137 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:A.57, A:N.58, A:D.100, C:Q.116 Water bridges: A:N.58 B3P.2: 8 residues within 4Å: Chain A: F.37, Q.116, N.135, R.136, P.137 Chain B: V.53, N.58, D.100 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.58, A:Q.116, A:N.135 Water bridges: B:A.57, B:N.58, A:Q.116, A:N.135 B3P.5: 8 residues within 4Å: Chain B: Q.116, R.136, P.137 Chain C: V.53, A.57, N.58, D.100 Ligands: GOL.4 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:A.57, C:N.58, C:D.100, B:Q.116 Water bridges: C:D.100, C:D.100

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.106 Chain B: D.106 Chain C: D.106 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: C:D.106, A:D.106, B:D.106, H2O.3, H2O.10, H2O.18

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain B: R.136 Ligands: B3P.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baas, B.J. et al., Functional and structural characterization of an unusual cofactor-independent oxygenase. Biochemistry (2015)

Release Date

2015-02-25

Peptides

RhCC: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RhCC