SMTL ID : 4u7v.1

Structure of wild-type HIV protease in complex with degraded photosensitive inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

homo-dimer

Ligands

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 3 residues within 4Å: Chain A: V.11, T.12, C.67 No protein-ligand interaction detected (PLIP) BME.3: 3 residues within 4Å: Chain B: V.11, T.12, C.67 No protein-ligand interaction detected (PLIP)

1 x 3EN: N-[(2S,4S,5S)-4-hydroxy-1,6-diphenyl-5-{[(1,3-thiazol-5-ylmethoxy)carbonyl]amino}hexan-2-yl]-L-valinamide(Non-covalent)

3EN.2: 18 residues within 4Å: Chain A: D.25, G.27, A.28, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.30, G.48, G.49, I.50, I.84 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:I.50, A:P.81, A:V.82, B:A.28, B:D.30, B:I.84 Hydrogen bonds: A:D.25, B:D.25, B:G.27, B:G.27, B:G.48 Water bridges: A:D.29, B:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schimer, J. et al., Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor. Nat Commun (2015)

Release Date

2015-03-25

Peptides

V-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

V-1 protease

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